updateOverlapMatrix: Update the overlap matrix for store in the shiny app...

Description Usage Arguments

View source: R/processNewRamp.R

Description

Update the overlap matrix for store in the shiny app directory

Usage

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updateOverlapMatrix(min_analyte, overlapmethod, together, conpass,
  host = "localhost", dbname = "ramp", username = "root")

Arguments

min_analyte

a int that specifies the minimum of analytes the pathway should have to be considered compute for overlap matrix

overlapmethod

a string that specifies the way to compute overlap matrix, must be 'balanced' or 'weighted'

together

a boolean value to compute overlap matrix for gene/metabolites separatly or together

conpass

a string that specifies password for database connection

host

a string that specifes host for database connection

dbname

a string that specifies database name of MySQL database

username

a string that specifies name of MySQL database


ncats/RaMP-DB documentation built on Nov. 21, 2020, 7:41 p.m.