Files in nwfsc-assess/nwfscSurvey

Northwest Fisheries Science Center Survey

NEWS.md R/Biomass.fn.R R/Format.AKSlope.fn.R R/GetN.fn.R R/GetSppDefault.fn.R R/GetStrata.fn.R R/GetSurveyAbb.fn.R R/PlotMap.fn.R R/PlotPresenceAbsence.fn.R R/PlotSexRatioStrata.fn.R R/PullBio.fn.R R/PullCatch.fn.R R/PullHaul.fn.R R/PullSpp.fn.R R/ReadInAges.fn.R R/ReadInLengths.R R/SexRatio.fn.R R/StrataAreas.fn.R R/StrataFactors.fn.R R/SurveyAFs.fn.R R/SurveyAgeAtLen.fn.R R/SurveyLFs.fn.R R/UnexpandedAF.fn.R R/checkStrata.fn.R R/check_dir.R R/check_strata.R R/check_survey.R R/codify_sex.R R/combine_tows.R R/createMatrix.fn.R R/createStrataDF.fn.R R/data.R R/draw.r R/est_growth.R R/est_vbgrowth.R R/est_weight_length.R R/filter_pulls.R R/fit_vbgrowth.R R/get_design_based.R R/get_expanded_comps.R R/get_input_n.R R/get_json.R R/get_raw_comps.R R/get_species_info.R R/get_url.R R/label.r R/label_tow_expansion.R R/plotBio.fn.R R/plotBioStrata.fn.R R/plotFreqData.fn.R R/plotSexRatio.fn.R R/plotVarLengthAtAge.fn.R R/plot_age_length_sampling.R R/plot_bio_patterns.R R/plot_comps.R R/plot_cpue.R R/plot_index.R R/plot_length_age.R R/plot_proportion.R R/plot_varlenage.R R/plot_weight_length.R R/plot_westcoast.R R/pretty_label_column.r R/pull_bio.R R/pull_biological_samples.R R/pull_catch.R R/pull_gemm.R R/pull_haul.R R/pull_spp.R R/save_rdata.r R/stopifnot.R R/unexpandedLF.fn.R R/utilities.R README.md data-raw/FRAM_DW_Fish_list.R data-raw/FRAM_DW_grid.R man-roxygen/ageErr.R man-roxygen/agehigh.R man-roxygen/agelow.R man-roxygen/common_name.R man-roxygen/convert.R man-roxygen/dir.R man-roxygen/fleet.R man-roxygen/month.R man-roxygen/partition.R man-roxygen/printfolder.R man-roxygen/sample_types.R man-roxygen/sci_name.R man-roxygen/sex.R man-roxygen/strat.df.R man-roxygen/strat.vars.R man-roxygen/strata.R man-roxygen/survey.R man-roxygen/verbose.R man-roxygen/years.R man/AFSCforeign_hauls.Rd man/Biomass.fn.Rd man/CheckStrata.fn.Rd man/CreateStrataDF.fn.Rd man/Format.AKSlope.fn.Rd man/GetN.fn.Rd man/GetSppDefault.fn.Rd man/GetStrata.fn.Rd man/GetSurveyAbb.fn.Rd man/PlotBio.fn.Rd man/PlotBioStrata.fn.Rd man/PlotFreqData.fn.Rd man/PlotMap.fn.Rd man/PlotPresenceAbsence.fn.Rd man/PlotSexRatio.fn.Rd man/PlotSexRatioStrata.fn.Rd man/PlotVarLengthAtAge.fn.Rd man/PullBio.fn.Rd man/PullCatch.fn.Rd man/PullHaul.fn.Rd man/PullSpp.Rd man/PullSpp.fn.Rd man/ReadInAges.fn.Rd man/ReadInLengths.fn.Rd man/SA3.Rd man/SA3_v2021.1.Rd man/SexRatio.fn.Rd man/StrataAreas.fn.Rd man/StrataFactors.fn.Rd man/SurveyAFs.fn.Rd man/SurveyAgeAtLen.fn.Rd man/SurveyLFs.fn.Rd man/UnexpandedAFs.fn.Rd man/UnexpandedLFs.fn.Rd man/availablecells.Rd man/bio_nwfsc_combo.Rd man/catch_nwfsc_combo.Rd man/check_dir.Rd man/check_strata.Rd man/check_survey.Rd man/codify_sex.Rd man/combine_tows.Rd man/convert_to_hex_string.Rd man/createMatrix.Rd man/draw_USEEZ.Rd man/draw_theme.Rd man/est_growth.Rd man/est_vbgrowth.Rd man/estimate_weight_length.Rd man/filter_pull.Rd man/fit_vbgrowth.Rd man/get_design_based.Rd man/get_expanded_comps.Rd man/get_input_n.Rd man/get_json.Rd man/get_raw_comps.Rd man/get_species_info.Rd man/get_url.Rd man/label_tow_expansion.Rd man/plot_age_length_sampling.Rd man/plot_bio_patterns.Rd man/plot_comps.Rd man/plot_cpue.Rd man/plot_index.Rd man/plot_length_age.Rd man/plot_proportion.Rd man/plot_varlenage.Rd man/plot_weight_length.Rd man/plot_westcoast.Rd man/pull_bio.Rd man/pull_biological_samples.Rd man/pull_catch.Rd man/pull_gemm.Rd man/pull_haul.Rd man/pull_spp.Rd man/save_rdata.Rd man/stopifnotcolumn.Rd man/wh_plot_proportion.Rd tests/testthat.R tests/testthat/test-codify_sex.R tests/testthat/test-comps.R tests/testthat/test-data.R tests/testthat/test-design_based.R tests/testthat/test-spp.R tests/testthat/test-strata.R tests/testthat/test-wh_proportion.R vignettes/nwfscSurvey.Rmd