API for ocbe-uio/cellmigRation
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
| Global functions | |
|---|---|
| AddDimension | Man page Source code |
| CellMig | Man page Source code |
| CellMig-class | Man page |
| CellMigPCA | Man page Source code |
| CellMigPCAclust | Man page Source code |
| CellMigPCAclustALL | Man page Source code |
| CellTracker | Man page Source code |
| CellTrackerMainLoop | Man page Source code |
| CentroidArray | Man page Source code |
| CentroidValidation | Man page Source code |
| ComputeTracksStats | Man page Source code |
| DetectRadii | Man page Source code |
| DiAutoCor | Man page Source code |
| DiRatio | Man page Source code |
| DiRatioPlot | Man page Source code |
| EstimateDiameterRange | Man page Source code |
| FMI | Man page Source code |
| FianlizeOptiParams | Man page Source code |
| FilterTrackedCells | Man page Source code |
| FinRes | Man page Source code |
| ForwardMigration | Man page Source code |
| GenAllCombos | Man page Source code |
| LinearConv2 | Man page Source code |
| LoadTiff | Man page Source code |
| MSD | Man page Source code |
| MakeHypercube | Man page Source code |
| MigrationStats | Man page Source code |
| NextOdd | Man page Source code |
| NonParallel4OptimizeParams | Man page Source code |
| NonParallelTrackLoop | Man page Source code |
| OptimizeParams | Man page Source code |
| OptimizeParamsMainLoop | Man page Source code |
| Parallel4OptimizeParams | Man page Source code |
| ParallelTrackLoop | Man page Source code |
| PerAndSpeed | Man page Source code |
| PlotTracksSeparately | Man page Source code |
| PostProcessTracking | Man page Source code |
| Prep4OptimizeParams | Man page Source code |
| ThreeConditions | Man page |
| TrackCellsDataset | Man page |
| TrajectoryDataset | Man page |
| ValidateTrackingArgs | Man page Source code |
| VeAutoCor | Man page Source code |
| VisualizeCntr | Man page Source code |
| VisualizeImg | Man page Source code |
| VisualizeStackCentroids | Man page Source code |
| WSADataset | Man page |
| aggregateFR | Man page Source code |
| aggregateTrackedCells | Man page Source code |
| bpass | Man page Source code |
| cellmigRation | Man page |
| cellmigRation-package | Man page |
| circshift | Man page Source code |
| cntrd | Man page Source code |
| fixDA | Man page Source code |
| fixExpName | Man page Source code |
| fixFM1 | Man page Source code |
| fixFM2 | Man page Source code |
| fixFM3 | Man page Source code |
| fixFM4 | Man page Source code |
| fixFM5 | Man page Source code |
| fixFM6 | Man page Source code |
| fixID1 | Man page Source code |
| fixID2 | Man page Source code |
| fixID3 | Man page Source code |
| fixID4 | Man page Source code |
| fixID5 | Man page Source code |
| fixID6 | Man page Source code |
| fixMSD | Man page Source code |
| fixPER1 | Man page Source code |
| fixPER2 | Man page Source code |
| fixPER3 | Man page Source code |
| getAvailableAggrMetrics | Man page Source code |
| getCellImages | Man page |
| getCellImages,trackedCells-method | Man page |
| getCellMigSlot | Man page |
| getCellMigSlot,CellMig,character-method | Man page |
| getCellTrackMeta | Man page |
| getCellTrackMeta,trackedCells-method | Man page |
| getCellTrackStats | Man page |
| getCellTrackStats,trackedCells-method | Man page |
| getCellTracks | Man page |
| getCellTracks,trackedCells-method | Man page |
| getCellsMeta | Man page Source code |
| getCellsStats | Man page Source code |
| getDACtable | Man page Source code |
| getDiRatio | Man page Source code |
| getFMItable | Man page Source code |
| getForMigtable | Man page Source code |
| getImageCentroids | Man page |
| getImageCentroids,trackedCells-method | Man page |
| getImageStacks | Man page Source code |
| getMSDtable | Man page Source code |
| getOptimizedParameters | Man page Source code |
| getOptimizedParams | Man page |
| getOptimizedParams,trackedCells-method | Man page |
| getPerAndSpeed | Man page Source code |
| getPopulationStats | Man page Source code |
| getProcessedImages | Man page |
| getProcessedImages,trackedCells-method | Man page |
| getProcessingStatus | Man page |
| getProcessingStatus,trackedCells-method | Man page |
| getResults | Man page Source code |
| getTracks | Man page Source code |
| getVACtable | Man page Source code |
| initialize,CellMig-method | Man page |
| initialize,trackedCells-method | Man page |
| initializeTrackParams | Man page Source code |
| innerBondRaster | Man page Source code |
| internalPermutation | Man page Source code |
| matfix | Man page Source code |
| nontrivialBondTracking | Man page Source code |
| pkfnd | Man page Source code |
| plot3DAllTracks | Man page Source code |
| plot3DTracks | Man page Source code |
| plotAllTracks | Man page Source code |
| plotSampleTracks | Man page Source code |
| preProcCellMig | Man page |
| rmPreProcessing | Man page Source code |
| runTrackingPermutation | Man page Source code |
| setAnalyticParams | Man page |
| setAnalyticParams,trackedCells,list-method | Man page |
| setCellMigSlot | Man page |
| setCellMigSlot,CellMig,character,ANY-method | Man page |
| setCellMigSlot,CellMig,character-method | Man page |
| setCellTracks | Man page |
| setCellTracks,trackedCells,matrix-method | Man page |
| setCellsMeta | Man page Source code |
| setExpName | Man page |
| setExpName,CellMig,character-method | Man page |
| setOptimizedParams | Man page |
| setOptimizedParams,trackedCells,ANY,ANY-method | Man page |
| setOptimizedParams,trackedCells-method | Man page |
| setProcessedImages | Man page |
| setProcessedImages,trackedCells,list-method | Man page |
| setProcessingStatus | Man page |
| setProcessingStatus,trackedCells,character,numeric-method | Man page |
| setTrackedCellsMeta | Man page |
| setTrackedCellsMeta,trackedCells,list-method | Man page |
| setTrackedCentroids | Man page |
| setTrackedCentroids,trackedCells,list-method | Man page |
| setTrackedPositions | Man page |
| setTrackedPositions,trackedCells,data.frame-method | Man page |
| setTrackingStats | Man page |
| setTrackingStats,trackedCells,ANY,ANY-method | Man page |
| setTrackingStats,trackedCells-method | Man page |
| sinkAway | Man page Source code |
| subNetworkTracking | Man page Source code |
| track | Man page Source code |
| trackHypercubeBuild | Man page Source code |
| trackSlideProcessing | Man page Source code |
| trackSlideWrapUp | Man page Source code |
| trackedCells | Man page |
| trackedCells-class | Man page |
| trivialBondRaster | Man page Source code |
| trivialBondTracking | Man page Source code |
| visualizeCellTracks | Man page Source code |
| visualizeTrcks | Man page Source code |
| warnMessage | Man page Source code |
| wsaPreProcessing | Man page Source code |
