noob: Noob background correction
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
View source: R/background_correction.R
Description
The function takes a SigSet and returns a modified SigSet
with background subtracted. Background was modelled in a normal distribution
and true signal in an exponential distribution. The Norm-Exp deconvolution
is parameterized using Out-Of-Band (oob) probes
Usage
1
Arguments
sset
a SigSet
oobRprobes
out-of-band red probes, if not given use all oobR
oobGprobes
out-of-band grn probes, if not given use all oobG
offset
offset
Value
a new SigSet with noob background correction
Examples
1
2
sset <- makeExampleTinyEPICDataSet()
sset.nb <- noob(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Value Examples
View source: R/background_correction.R
Description
The function takes a SigSet and returns a modified SigSet
with background subtracted. Background was modelled in a normal distribution
and true signal in an exponential distribution. The Norm-Exp deconvolution
is parameterized using Out-Of-Band (oob) probes
Usage
1 |
Arguments
sset |
a |
oobRprobes |
out-of-band red probes, if not given use all oobR |
oobGprobes |
out-of-band grn probes, if not given use all oobG |
offset |
offset |
Value
a new SigSet with noob background correction
Examples
1 2 | sset <- makeExampleTinyEPICDataSet()
sset.nb <- noob(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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