openSesameToFile: openSesame pipeline with file-backed storage
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
Description
openSesame pipeline with file-backed storage
Usage
1
openSesameToFile(map_path, idat_dir, BPPARAM = SerialParam(), inc = 4)
Arguments
map_path
path of file to be mapped (beta values file)
idat_dir
source IDAT directory
BPPARAM
get parallel with MulticoreParam(2)
inc
bytes per item data storage. increase to 8 if precision
is important. Most cases 32-bit representation is enough.
Value
a sesame::fileSet
Examples
1
2
openSesameToFile('mybetas',
system.file('extdata',package='sesameData'))
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Value Examples
Description
openSesame pipeline with file-backed storage
Usage
1 | openSesameToFile(map_path, idat_dir, BPPARAM = SerialParam(), inc = 4)
|
Arguments
map_path |
path of file to be mapped (beta values file) |
idat_dir |
source IDAT directory |
BPPARAM |
get parallel with MulticoreParam(2) |
inc |
bytes per item data storage. increase to 8 if precision is important. Most cases 32-bit representation is enough. |
Value
a sesame::fileSet
Examples
1 2 | openSesameToFile('mybetas',
system.file('extdata',package='sesameData'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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