qualityRank: This function looks at public data of similar nature e.g.,...
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
Description
This function looks at public data of similar nature
e.g., tissue, FFPE vs non-FFPE, etc to evaluate the quality
of the target data quality
Usage
1
qualityRank(sset, tissue = NULL, samplePrep = NULL, raw = FALSE)
Arguments
sset
a raw (unprocessed) SigSet
tissue
A string (blood,buccal and saliva)
samplePrep
FFPE, fresh, frozen
raw
to return the raw comparison table
Value
three numbers:
1. The number of public samples compared.
2. The fraction of public samples with more nondetection, and
3. The fraction of public samples with lower mean intensity
4. The higher the fraction, the better the sample.
Examples
1
2
sset <- sesameDataGet('EPIC.1.LNCaP')$sset
ranks <- qualityRank(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Value Examples
Description
This function looks at public data of similar nature e.g., tissue, FFPE vs non-FFPE, etc to evaluate the quality of the target data quality
Usage
1 | qualityRank(sset, tissue = NULL, samplePrep = NULL, raw = FALSE)
|
Arguments
sset |
a raw (unprocessed) |
tissue |
A string (blood,buccal and saliva) |
samplePrep |
FFPE, fresh, frozen |
raw |
to return the raw comparison table |
Value
three numbers: 1. The number of public samples compared. 2. The fraction of public samples with more nondetection, and 3. The fraction of public samples with lower mean intensity 4. The higher the fraction, the better the sample.
Examples
1 2 | sset <- sesameDataGet('EPIC.1.LNCaP')$sset
ranks <- qualityRank(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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