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Tools For Analyzing Illumina Infinium DNA Methylation Arrays

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topSegments: Top segments in differential methylation

topSegments: Top segments in differential methylation
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays

Description Usage Arguments Value Examples

View source: R/differential_methylation.R

Description

This is a utility function to show top differential methylated segments. The function takes a coefficient table as input and output the same table ordered by the sigificance of the segments.

Usage

1
topSegments(cf1)

Arguments

cf1

coefficient table of one factor from DMR

Value

coefficient table ordered by adjusted p-value of segments

Examples

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2
3
data <- sesameDataGet('HM450.76.TCGA.matched')
cf <- DMR(data$betas, data$sampleInfo, ~type)
topSegments(cf[[1]])

sesame documentation built on Nov. 15, 2020, 2:08 a.m.

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