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HAPim: HapIM
The package provides a set of functions whose aim is to propose 4 methods of QTL detection. HAPimLD is an interval-mapping method designed for unrelated individuals with no family information that makes use of linkage disequilibrium. HAPimLDL is an interval-mapping method for design of half-sib families. It combines linkage analysis and linkage disequilibrium. HaploMax is based on an analysis of variance with a dose haplotype effect. HaploMaxHS is based on an analysis of variance with a sire effect and a dose haplotype effect in half-sib family design. Fundings for the package development were provided to the LDLmapQTL project by the ANR GENANIMAL program and APIS-GENE.
Getting started
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Package details |
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| Author | S. Dejean, N. Oumouhou, D. Estivals, B. Mangin |
| Maintainer | Brigitte Mangin <brigitte.mangin@toulouse.inra.fr> |
| License | GPL |
| Version | 1.3 |
| Package repository | View on CRAN |
| Installation |
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