esp.freq.hap: expectation of extended haplotype frequencies
In HAPim: HapIM

Description Usage Arguments Value Author(s) References See Also

This function computes the expectation of (haplotype + Q allele) frequencies under a Wrigth-Fisher model. The function can be viewed as an internal function. The user does not have to call it by himself.

1	esp.freq.hap(hap.assoc, piQ.t0, timeT, pi.hap, res.structure, poids.D)

`hap.assoc`	numeric value, associated haplotype.
`piQ.t0`	frequency of Q allele at time t=0.
`timeT`	time of population evolution.
`pi.hap`	provided by `pi.hap()` function, list of numeric objects.
`res.structure`	provided by `structure.hap()` function, list of numeric objects.
`poids.D`	provided by `poids.D()` function, list of numeric objects.

The value returned is a numeric vector containing for each observed haplotype, the frequencies of its extension with the Q allele.

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

pi.hap, structure.hap, poids.D

HAPim documentation built on May 2, 2019, 12:10 p.m.