This function finds the alleles present at each marker. It can be viewed as an internal function. The user does not have to call it by himself.
character matrix (n x p) of individual haplotypes.
The returned value is a list of alleles for each marker.
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.