obj.haplomax.HS.add: Analysis of variance of the HaploMmax method in half-sib...
In HAPim: HapIM

Description Usage Arguments Value Author(s) References See Also

The function computes the regression analysis with a dose haplotype effect and a sire effect in a design of half-sib families. It can be viewed as an internal function. The user does not have to call it by himself.

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obj.haplomax.HS.add(genea, perf, CD, assoc, res.structure, pi.hap, cor.pere, 

cor.mere)

`genea`	numeric matrix (number of individuals x 2) which contains individual index and corresponding sire index of each individual.
`perf`	numeric vector of length=number of individuals which contains the performances of individuals.
`CD`	numeric vector of length=number of individuals which contains the CD of individuals. var(perf$_i$)=error variance/CD$^2_i$
`assoc`	numeric value, associated haplotype
`res.structure`	provided by `structure.hap()` function, list of objects.
`pi.hap`	provided by `pi.hap()` function, list of numeric objects.
`cor.pere`	provided by `corresp()` function, list of numeric objects.
`cor.mere`	provided by `corresp()` function, list of numeric objects.

The returned value is an object of aov class containing the dose haplotype + sire effect regression.

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

corresp, pi.hap, structure.hap

HAPim documentation built on May 30, 2017, 3:13 a.m.