# intra-sire log likelihood of HAPimLDL method under H1.

### Description

The function calculates the value of intra-sire log likelihood of HAPimLDL method under alternative hypothesis H1. It can be viewed as an internal function. The user does not have to call it by himself.

### Usage

1 2 3 | ```
vrais.LDL.add.pere(moyenne.pere, alpha.Q, s, CD, perf, PLA, LD.m, LD.chrom1,
LD.chrom2, mean.gene)
``` |

### Arguments

`moyenne.pere` |
results provided by |

`alpha.Q` |
parameter of QTL effect. |

`s` |
parameter of the error variance. |

`CD` |
numeric vector of length=number of individuals which contains the CD of individuals. var(perf$_i$)=s/CD$^2_i$ |

`perf` |
numeric vector of length=number of individuals which contains the performances of individuals. |

`PLA` |
numeric vector of length=number of individuals which contains transmission probabilities at a single test position |

`LD.m` |
results provided by |

`LD.chrom1` |
results provided by |

`LD.chrom2` |
results provided by |

`mean.gene` |
parameter of performance mean. |

### Value

The returned value is the value of intra-sire log likelihood of HAPimLDL method under alternative hypothesis H1.

### Author(s)

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

### References

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

### See Also

`moyenne.pere`

, `proba.DL`

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