The function calculates the value of intrasire log likelihood of HAPimLDL method under alternative hypothesis H1. It can be viewed as an internal function. The user does not have to call it by himself.
1 2 3  vrais.LDL.add.pere(moyenne.pere, alpha.Q, s, CD, perf, PLA, LD.m, LD.chrom1,
LD.chrom2, mean.gene)

moyenne.pere 
results provided by 
alpha.Q 
parameter of QTL effect. 
s 
parameter of the error variance. 
CD 
numeric vector of length=number of individuals which contains the CD of individuals. var(perf$_i$)=s/CD$^2_i$ 
perf 
numeric vector of length=number of individuals which contains the performances of individuals. 
PLA 
numeric vector of length=number of individuals which contains transmission probabilities at a single test position 
LD.m 
results provided by 
LD.chrom1 
results provided by 
LD.chrom2 
results provided by 
mean.gene 
parameter of performance mean. 
The returned value is the value of intrasire log likelihood of HAPimLDL method under alternative hypothesis H1.
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
publication to be submitted: C. CiercoAyrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
moyenne.pere
, proba.DL
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