freq.all: allelic frequencies

Description Usage Arguments Value Author(s) References

Description

The function calculates allelic frequencies by marker given a set of haplotypes. It can be viewed as an internal function. The user does not have to call it by himself.

Usage

1
freq.all(hap)

Arguments

hap

numeric matrix (number of individuals x number of markers) which contains the haplotype of individuals.

Value

The returned value is a list of n elements (n=number of markers) which gives the allelic frequencies by marker, ranged in ascending order of allele index.

Author(s)

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

References

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.


HAPim documentation built on May 30, 2017, 3:13 a.m.