freq.all: allelic frequencies
In HAPim: HapIM
Description
Usage
Arguments
Value
Author(s)
References
Description
The function calculates allelic frequencies by marker given a set of haplotypes.
It can be viewed as an internal function.
The user does not have to call it by himself.
Usage
1
freq.all(hap)
Arguments
hap
numeric matrix (number of individuals x number of markers) which contains the haplotype of individuals.
Value
The returned value is a list of n elements (n=number of markers) which
gives the allelic frequencies by marker, ranged in ascending order of allele index.
Author(s)
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
References
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert,
T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin.
Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
HAPim documentation built on May 30, 2017, 3:13 a.m.
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Description Usage Arguments Value Author(s) References
Description
The function calculates allelic frequencies by marker given a set of haplotypes. It can be viewed as an internal function. The user does not have to call it by himself.
Usage
1 | freq.all(hap)
|
Arguments
hap |
numeric matrix (number of individuals x number of markers) which contains the haplotype of individuals. |
Value
The returned value is a list of n elements (n=number of markers) which gives the allelic frequencies by marker, ranged in ascending order of allele index.
Author(s)
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
References
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
HAPim documentation built on May 30, 2017, 3:13 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
As an Amazon Associate I earn from qualifying purchases.
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