The function calculates allelic frequencies by marker given a set of haplotypes. It can be viewed as an internal function. The user does not have to call it by himself.
numeric matrix (number of individuals x number of markers) which contains the haplotype of individuals.
The returned value is a list of n elements (n=number of markers) which gives the allelic frequencies by marker, ranged in ascending order of allele index.
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
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