recode.hap: recoding of haplotypes
In HAPim: HapIM
Description
Usage
Arguments
Value
Author(s)
References
See Also
Description
The function recodes haplotypes of individuals in consecutive numeric values.
It can be viewed as an internal function.
The user does not have to call it by himself.
Usage
1
recode.hap(hap, all.marq)
Arguments
hap
character matrix (number of individuals x number of markers)
which contains the haplotype of individuals.
all.marq
results provided by allele.marq() function,
list of alleles (coded with character values) for each marker.
Value
the returned value is a numeric matrix (number of individuals x number of markers)
which contains the recoded haplotype of individuals.
Author(s)
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
References
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert,
T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin.
Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
See Also
HAPim documentation built on May 2, 2019, 12:10 p.m.
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Description Usage Arguments Value Author(s) References See Also
Description
The function recodes haplotypes of individuals in consecutive numeric values. It can be viewed as an internal function. The user does not have to call it by himself.
Usage
1 | recode.hap(hap, all.marq)
|
Arguments
hap |
character matrix (number of individuals x number of markers) which contains the haplotype of individuals. |
all.marq |
results provided by |
Value
the returned value is a numeric matrix (number of individuals x number of markers) which contains the recoded haplotype of individuals.
Author(s)
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
References
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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