proba.DL.diplotype: probabilities due to linkage disequilibrium
In HAPim: HapIM

Description Usage Arguments Value Author(s) References See Also

The function calculates probabilities due to linkage disequilibrium for a diplotype. It can be viewed as an internal function. The user does not have to call it by himself.

1	proba.DL.diplotype(DL.chrom1, DL.chrom2)

`DL.chrom1`	results provided by `proba.DL()` function, numeric vector of length=number of individuals which contains probabilities due to linkage disequilibrium on the first chromosome given a genotype.
`DL.chrom2`	results provided by `proba.DL()` function, numeric vector of length=number of individuals which contains probabilities due to linkage disequilibrium on the second chromosome given a genotype.

The returned value is a numeric matrix (number of individuals x 4) containing probabilities due to linkage disequilibrium for a diplotype.

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

proba.DL

HAPim documentation built on May 2, 2019, 12:10 p.m.