obj.LDL.add.H0: log-likelihood value of the HAPimLDL method under H0
In HAPim: HapIM

Description Usage Arguments Value Author(s) References See Also

The function calculates the log-likelihood value of the HAPimLDL method under hypothesis H0. It can be viewed as an internal function. The user does not have to call it by himself.

1	obj.LDL.add.H0(moyenne.pere, perf, CD, desc.pere)

`moyenne.pere`	results provided by `moyenne.pere()` function, mean of half-sib family performances.
`perf`	numeric vector of length=number of individuals which contains the performances of individuals.
`CD`	numeric vector of length=number of individuals which contains the CD of individuals. var(perf$_i$)=s/CD$^2_i$
`desc.pere`	results provided by `descendant.pere()` function, numeric matrix (number of sires x 2) which gives for each sire, the first and last indexes of its progeny.

The returned value is the log-likelihood value of HAPimLDL method under hypothesis HO.

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

moyenne.pere, descendant.pere

HAPim documentation built on May 2, 2019, 12:10 p.m.