proba.DL: conditional probabilities
In HAPim: HapIM

Description Usage Arguments Value Author(s) References See Also

The function calculates conditional probabilities of having Q allele given marker information due to linkage disequilibrium.

1	proba.DL(piQ.t0, esp.freq.hap, res.structure, pi.hap, res.corresp)

`piQ.t0`	frequency of Q allele at time t=0.
`esp.freq.hap`	results provided by `esp.freq.hap()` function, numeric vector.
`res.structure`	results provided by `structure.hap()` function, list of numeric objects.
`pi.hap`	provided by `pi.hap()` function, list of numeric objects.
`res.corresp`	results provided by `corresp()` function, list of 2 numeric objects.

The returned value is a numeric vector of length=number of individuals which contains conditional probabilities of having Q allele given marker information due to linkage disequilibrium.

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

esp.freq.hap, structure.hap, pi.hap, corresp

HAPim documentation built on May 2, 2019, 12:10 p.m.