Description Usage Arguments Value Author(s) References See Also
The function calculates the log-likelihood value of HAPimLD method under alternative hypothesis H1. It can be viewed as an internal function. The user does not have to call it by himself.
1 | obj.LD.add(param,don)
|
param |
numeric vector of length=5 containing parameters to maximize: -error variance -Q allele effect -evolution time -frequency of Q allele at time t=0 -performances mean |
don |
list of 8 objects. Some objects are results provided by |
The returned value is the log-likelihood value of HAPimLD method under hypothesis H1.
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
depart.LD
, corresp
, pi.hap
, structure.hap
, poids.D
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