The function calculates the log-likelihood value of HAPimLD method under alternative hypothesis H1. It can be viewed as an internal function. The user does not have to call it by himself.
numeric vector of length=5 containing parameters to maximize:
-Q allele effect
-frequency of Q allele at time t=0
list of 8 objects. Some objects are results provided by
The returned value is the log-likelihood value of HAPimLD method under hypothesis H1.
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.