HAPim-package: HAPim
In HAPim: HapIM
Description
Details
Author(s)
References
Description
The package provides a set of functions whose aim is to propose 4 methods of QTL detection:
-HAPimLD is an interval-mapping method designed for unrelated individuals
with no family information that makes use of linkage disequilibrium.
-HAPimLDL is an interval-mapping method for design of half-sib families. It
combines linkage analysis and linkage disequilibrium.
-HaploMax is based on an analysis of variance with a dose haplotype effect.
-HaploMaxHS is based on an analysis of variance with a sire effect and a dose haplotype effect in half-sib family design.
Fundings for the package development were provided to the LDLmapQTL project by the ANR GENANIMAL program and APIS-GENE.
Details
Package: HAPim
Type: Package
Version: 1.3
Date: 2009-10-12
License: none
Author(s)
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
Maintainer: Brigitte Mangin <brigitte.mangin@toulouse.inra.fr>
References
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert,
T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin.
Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
HAPim documentation built on May 2, 2019, 12:10 p.m.
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Description Details Author(s) References
Description
The package provides a set of functions whose aim is to propose 4 methods of QTL detection:
-HAPimLD is an interval-mapping method designed for unrelated individuals with no family information that makes use of linkage disequilibrium.
-HAPimLDL is an interval-mapping method for design of half-sib families. It combines linkage analysis and linkage disequilibrium.
-HaploMax is based on an analysis of variance with a dose haplotype effect.
-HaploMaxHS is based on an analysis of variance with a sire effect and a dose haplotype effect in half-sib family design.
Fundings for the package development were provided to the LDLmapQTL project by the ANR GENANIMAL program and APIS-GENE.
Details
| Package: | HAPim |
| Type: | Package |
| Version: | 1.3 |
| Date: | 2009-10-12 |
| License: | none |
Author(s)
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
Maintainer: Brigitte Mangin <brigitte.mangin@toulouse.inra.fr>
References
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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