pi.hap: haplotype frequencies
In HAPim: HapIM

Description Usage Arguments Value Author(s) References See Also

This function computes the frequencies of each haplotype. The function can be viewed as an internal function. The user does not have to call it by himself.

1	pi.hap(freq.marq, res.structure)

`freq.marq`	results provided by `freq.all()` function, list of numeric objects which contains the allele frequencies.
`res.structure`	results provided by `structure.hap()` function, list of objects.

The returned value is a list of numeric vectors containing haplotypes freqencies estimated under marker independency.

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

freq.all, structure.hap

HAPim documentation built on May 2, 2019, 12:10 p.m.