data.test: data.test

In HAPim: HapIM

Description

"data.test" is a list of 9 elements. We consider a 10 cM chromosomal region with 10 equally spaced biallelic markers and a design of 5 half-sib families, each sire having 10 sons. Data are prepared for a QTL detection in the middle of each marker intervalle.

Usage

data(data.test)

Format

A list containing the following components:

- map: vector (9) with numerical values

- hap.trans.mere: matrix (50 x 10) with character values

- hap.trans.pere: matrix (50 x 10) with character values

- hap.chrom1.pere: matrix (5 x 10) with character values

- hap.chrom2.pere: matrix (5 x 10) with character values

- perf: vector (50) with numerical values

- CD: vector (50) with numerical values

- PLA: matrix (50 x 9) with numerical values

- genea: matrix (50 x 2) with numerical values

Examples

data(data.test)

#distance between two consecutive markers on the chromosome
 map=data.test[[1]]
 map

#haplotype transmitted by dams
#son information (lines) are ordered following genea[,1]
 hap.trans.mere=data.test[[2]]
 hap.trans.mere

#haplotype transmitted by sires
#son information (lines) are ordered following genea[,1]
 hap.trans.pere=data.test[[3]]
 hap.trans.pere

#haplotype of the first chromosome for each sire
#sire information (lines) are ordered following unique(genea[,2])
 hap.chrom1.pere=data.test[[4]]
 hap.chrom1.pere

#haplotype of the second chromosome for each sire
#sire information (lines) are ordered following unique(genea[,2])
 hap.chrom2.pere=data.test[[5]]
 hap.chrom2.pere

#performances of sons
#son information are ordered following genea[,1]
 perf=data.test[[6]]
 perf

#CD of sons
#son information are ordered following genea[,1]
 CD=data.test[[7]]
 CD

#transmission probabilities of sons for each test position
#son information (lines) are ordered following genea[,1]
 PLA=data.test[[8]]
 PLA

#son index and  index of his father
 genea=data.test[[9]]
 genea

HAPim documentation built on May 2, 2019, 12:10 p.m.