retrouve.all: haplotype reconstruction
In HAPim: HapIM

Description Usage Arguments Value Author(s) References See Also

The function finds alleles of the associated haplotype. It can be viewed as an internal function. The user does not have to call it by himself.

1	retrouve.all(assoc, res.structure, all.marq)

`assoc`	numeric value, associated haplotype.
`res.structure`	results provided by `structure.hap()` function, list of objects.
`all.marq`	results provided by `allele.marq()` function, list of alleles for each marker.

The returned value is a character which corresponds to the concatenation of alleles of the associated haplotype.

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

structure.hap, allele.marq

HAPim documentation built on May 2, 2019, 12:10 p.m.