obj.LDL.add: log-likelihood value of the HAPimLDL method under H1
In HAPim: HapIM

Description Usage Arguments Value Author(s) References See Also

The function gives the log-likelihood value of the HAPimLDL method under alternative hypothesis H1. It can be viewed as an internal function. The user does not have to call it by himself.

1	obj.LDL.add(param,don)

param

numeric vector of length=5 containing containing parameters to maximize:

-error variance

-Q allele effect

-evolution time

-Q allele frequency at time t=0

-performance mean

don

list of 12 objects. Some objects are results provided by descendant.pere(), moyenne.pere(), corresp(), pi.hap(), structure.hap(), poids.D() functions.

The returned value is the log-likelihood value of the HAPimLDL method under alternative hypothesis H1.

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

depart.LDL, descendant.pere, moyenne.pere, corresp, pi.hap, structure.hap, poids.D