API for MoBPS
Modular Breeding Program Simulator

Global functions
.onAttach	Source code
OGC	Man page Source code
add.array	Man page Source code
add.combi	Man page Source code
add.diag	Man page Source code
add.diversity	Man page Source code
add.fixed.effects	Man page Source code
add.founder.kinship	Man page Source code
alpha_to_beta	Man page Source code
analyze.bv	Man page Source code
analyze.population	Man page Source code
bit.snps	Man page Source code
bit.storing	Man page Source code
breeding.diploid	Man page Source code
breeding.intern	Man page Source code
breeding.intern1	Man page Source code
breeding.intern2	Man page Source code
breeding.intern3	Man page Source code
breeding.intern4	Man page Source code
breeding.intern5	Man page Source code
breeding.intern6	Man page Source code
breeding.intern7	Man page Source code
breeding.intern8	Man page Source code
bv.development	Man page Source code
bv.development.box	Man page Source code
bv.standardization	Man page Source code
calculate.bv	Man page Source code
cattle_chip	Man page
check.parents	Man page Source code
chicken_chip	Man page
clean.up	Man page Source code
codeOriginsR	Man page Source code
combine.traits	Man page Source code
computing.costs	Man page Source code
computing.costs.cohorts	Man page Source code
computing.snps	Man page Source code
computing.snps_single	Man page Source code
creating.diploid	Man page Source code
creating.phenotypic.transform	Man page Source code
creating.trait	Man page Source code
decodeOriginsR	Man page Source code
demiraculix	Man page Source code
derive.loop.elements	Man page Source code
diag.mobps	Man page Source code
edges.fromto	Man page Source code
edit_animal	Man page Source code
effect.estimate.add	Man page Source code
effective.size	Man page Source code
epi	Man page Source code
ex_json	Man page
ex_pop	Man page
exist.cohort	Man page Source code
find.chromo	Man page Source code
find.snpbefore	Man page Source code
founder.simulation	Man page Source code
generation.individual	Man page Source code
get.admixture	Man page Source code
get.age.point	Man page Source code
get.allele.freq	Man page Source code
get.bv	Man page
get.bve	Man page
get.class	Man page Source code
get.cohorts	Man page Source code
get.cohorts.individual	Man page Source code
get.computing.time	Man page Source code
get.creating.type	Man page Source code
get.culling.time	Man page Source code
get.culling.type	Man page Source code
get.cullingtime	Man page Source code
get.database	Man page Source code
get.death.point	Man page Source code
get.dendrogram	Man page Source code
get.dendrogram.heatmap	Man page Source code
get.dendrogram.trait	Man page Source code
get.distance	Man page Source code
get.ebv	Source code
get.effect.freq	Man page Source code
get.effective.size	Man page Source code
get.fixed.effects.p	Man page Source code
get.geno	Man page Source code
get.geno.time	Man page Source code
get.genotyped	Man page Source code
get.genotyped.snp	Man page Source code
get.gv	Source code
get.haplo	Man page Source code
get.id	Man page Source code
get.index	Man page Source code
get.infos	Man page Source code
get.is.first	Man page Source code
get.is.last	Man page Source code
get.litter	Man page Source code
get.litter.effect	Man page Source code
get.maf	Man page Source code
get.map	Man page Source code
get.ngen	Man page Source code
get.nindi	Man page Source code
get.npheno	Man page Source code
get.ntrait	Man page Source code
get.pca	Man page Source code
get.pedigree	Man page Source code
get.pedigree.visual	Man page Source code
get.pedigree2	Man page Source code
get.pedigree3	Man page Source code
get.pedigree_old	Man page Source code
get.pedmap	Man page Source code
get.pen	Man page Source code
get.pen.effect	Man page Source code
get.pheno	Man page Source code
get.pheno.off	Man page Source code
get.pheno.off.count	Man page Source code
get.pheno.single	Man page Source code
get.pheno.time	Man page Source code
get.phylogenetic.tree	Man page Source code
get.plink	Man page Source code
get.pool	Man page Source code
get.pool.founder	Man page Source code
get.qtl	Man page Source code
get.qtl.effects	Man page Source code
get.qtl.variance	Man page Source code
get.recombi	Man page Source code
get.reliability	Man page Source code
get.selectionbve	Man page Source code
get.selectionindex	Man page Source code
get.sex	Man page Source code
get.size	Man page Source code Source code
get.snapshot	Man page Source code
get.snapshot.single	Man page Source code
get.time.point	Man page Source code
get.trafo.p	Man page Source code
get.trafo.p.single	Man page Source code
get.trait.name	Man page Source code
get.uhat	Man page Source code
get.variance	Man page Source code
get.variance.components	Man page Source code
get.vcf	Man page Source code
group.diff	Man page Source code
inbreeding.emp	Man page Source code
inbreeding.exp	Man page Source code
insert.bv	Man page Source code
insert.bve	Man page Source code
insert.pheno	Man page Source code
insert.pheno.single	Man page Source code
json.simulation	Man page Source code
kinship.development	Man page Source code
kinship.emp	Man page Source code
kinship.emp.fast	Man page Source code
kinship.emp.fast.between	Man page Source code
kinship.exp	Man page Source code
ld.decay	Man page Source code
maize_chip	Man page
matrix.posdef	Man page Source code
merging.cohorts	Man page Source code
merging.trait	Man page Source code
miesenberger.index	Man page Source code
miraculix	Man page Source code
mutation.intro	Man page Source code
new.base.generation	Man page Source code
ogc.mobps	Man page Source code
optimize.cores	Man page Source code
pedigree.matrix	Man page Source code
pedigree.simulation	Man page Source code
pedmap.to.phasedbeaglevcf	Man page Source code
pig_chip	Man page
plot.population	Man page Source code
recalculate.bv	Man page Source code
recalculate.manual	Man page Source code
recombination.function.haldane	Man page Source code
renaming.cohort	Man page Source code
rowMedian	Man page Source code
scaling.relationship	Man page Source code
set.age.point	Man page Source code
set.class	Man page Source code
set.default	Man page Source code
set.mean.pool	Man page Source code
set.time.point	Man page Source code
sheep_chip	Man page
sortd	Man page Source code
ssGBLUP	Man page Source code
summary.population	Man page Source code
vlist	Man page Source code
write.pedigree	Man page Source code