Files in OpenMx

Extended Structural Equation Modelling

NEWS.md README.md R/MxCommunication.R R/MxMMI.R R/DefinitionVars.R R/MxCompare.R R/MxUnitTesting.R R/MxFlatSearchReplace.R R/MxEval.R R/MxDetectCores.R R/MxModelFunctions.R R/MxVersion.R R/MxFitFunctionRow.R R/MxInterval.R R/StandMatrix.R R/UnitMatrix.R R/MxExponential.R R/FullMatrix.R R/MxFitFunctionR.R R/MxPPML.R R/MxExpectationMixture.R R/MxGraphviz.R R/MxExpectationHiddenMarkov.R R/MxExpectationRAM.R R/MxFitFunctionAlgebra.R R/MxRAMModel.R R/omxGetNPSOL.R R/MxRetro.R R/omxReadGRMBin.R R/MxRunHelperFunctions.R R/MxBaseNamed.R R/MxPredict.R R/omxBrownie.R R/MxAlgebraConvert.R R/MxOptions.R R/MxModelDisplay.R R/MxModelParameters.R R/MxDependencies.R R/MxAlgebraObjective.R R/MxExpectationStateSpace.R R/IdenMatrix.R R/MxThreshold.R R/MxTypes.R R/MxFitFunctionGREML.R R/MxSaturatedModel.R R/MxDeparse.R R/MxFactorScores.R R/MxExpectation.R R/MxApply.R R/MxRename.R R/MxGraph.R R/MxReservedNames.R R/MxMultiModel.R R/MxLISRELObjective.R R/ZeroMatrix.R R/MxFitFunction.R R/MxAlgebraFunctions.R R/MxFitFunctionWLS.R R/MxCycleDetection.R R/MxExpectationLISREL.R R/cache.R R/MxExpectationBA81.R R/omxConstrainThresholds.R R/MxPenalty.R R/MxRun.R R/OriginalMx.R R/MxSummary.R R/MxFitFunctionMultigroup.R R/MxFitFunctionML.R R/MxAutoStart.R R/MxMatrix.R R/MxRAMObjective.R R/SdiagMatrix.R R/MxUntitled.R R/MxAlgebra.R R/MxFIMLObjective.R R/MxErrorHandling.R R/MxDataWLS.R R/DiagMatrix.R R/MxCompute.R R/MxRowObjective.R R/MxPath.R R/MxLISRELModel.R R/0ClassUnion.R R/MxTryHard.R R/MxMI.R R/MxExpectationGREML.R R/MxBounds.R R/zzz.R R/LowerMatrix.R R/SymmMatrix.R R/MxObjectiveMetaData.R R/MxRestore.R R/MxNamespace.R R/MxMatrixFunctions.R R/MxData.R R/MxAvailableOptimizers.R R/MxFlatModel.R R/MxSearchReplace.R R/MxModel.R R/MxExpectationNormal.R R/MxRobustSE.R R/MxRObjective.R R/MxSE.R R/MxMLObjective.R R/MxConstraint.R R/MxRAMtoML.R R/MxSwift.R R/MxSquareBracket.R inst/doc/factor_analysis.R inst/doc/regularization.R inst/doc/reg_mimic.R inst/doc/regularization.Rmd inst/doc/mr.R inst/doc/deriv.Rmd inst/doc/reg_mimic.Rmd inst/doc/deriv.R inst/doc/mr.Rmd inst/doc/factor_analysis.Rmd inst/models/nightly/startsTestMissing.R inst/models/nightly/brooke.R inst/models/nightly/JointAutoStrat.R inst/models/nightly/GREML_monophenotype_1GRM.R inst/models/nightly/RegimeSwitching_MatrixRawNoCholDifferentTransitions.R inst/models/nightly/wu-neale-2012-symmetry.R inst/models/nightly/180209--defvars.R inst/models/nightly/3LatentMultiRegWith2LevelModeratorAndMissing-a.R inst/models/nightly/RAM-3Factor-48Indicators-rawdata-a.R inst/models/nightly/SkippedRows.R inst/models/nightly/OneFactorOrdinal_MatrixRaw.R inst/models/nightly/ifa-meat-2d.R inst/models/nightly/RampartDimnames.R inst/models/nightly/RAM-3Factor-24Indicators-rawdata-a.R inst/models/nightly/AnalyticGradientTest.R inst/models/nightly/ETC88.R inst/models/nightly/Extreme_Multiformity_chi.R inst/models/nightly/PPML_100days_cov.R inst/models/nightly/3LatentMultiRegWithContinuousModerator-d.R inst/models/nightly/ifa-bifactor.R inst/models/nightly/ModificationIndexCheck.R inst/models/nightly/grm_in_fiml.R inst/models/nightly/xxm-mlcfa.R inst/models/nightly/thresholdModel1Factor3Variate.R inst/models/nightly/ifa-cai2009.R inst/models/nightly/3LatentMultiRegWith2LevelModeratorAndMissing-c.R inst/models/nightly/xxm-lgc.R inst/models/nightly/ContinuousTime.R inst/models/nightly/RAM-3Factor-48Indicators-covdata-a.R inst/models/nightly/RAM-3Factor-24Indicators-covdata-a.R inst/models/nightly/thresholdModel1Factor5Variate.R inst/models/nightly/RegimeSwitching_MatrixRawNoCholDifferentTransitionsAllFixed.R inst/models/nightly/3LatentMultiRegWithContinuousModerator-a.R inst/models/nightly/CSOLNP_segfault_regression_test--unidentifed_EFA.R inst/models/nightly/PPML_test1L3M.R inst/models/nightly/multimodelInferenceTest.R inst/models/nightly/StateSpaceContinuous.R inst/models/nightly/PPML_100days.R inst/models/nightly/wu-neale-2012-lgc.R inst/models/nightly/OneFactorOrdinal01_MatrixRaw.R inst/models/nightly/LegacyWLS+CI.R inst/models/nightly/SimpleMix.R inst/models/nightly/StateSpaceLatentGrowth.R inst/models/nightly/JointWLS.R inst/models/nightly/InvalidComparisonDetection.R inst/models/nightly/3LatentMultiRegWith2LevelModeratorAndMissing-b.R inst/models/nightly/3LatentMultiRegWithContinuousModerator-b.R inst/models/nightly/3LatentMultiRegWithContinuousModerator-e.R inst/models/nightly/GrowthMixtureModelRandomStarts.R inst/models/nightly/Power1.R inst/models/nightly/3LatentMultiRegWith2LevelModerator-c.R inst/models/nightly/xxm-faces.R inst/models/nightly/MultilevelStateSpaceEx5.R inst/models/nightly/xxm-cfars.R inst/models/nightly/RAM-3Factor-24Indicators-megadata-a.R inst/models/nightly/MultigroupRobustSE_test.R inst/models/nightly/ParamBoot2.R inst/models/nightly/mplus-ex9.12.R inst/models/nightly/DefaultOptTolerance.R inst/models/nightly/JointMissingTest.R inst/models/nightly/GREML_monophenotype_1GRM_GradDesc.R inst/models/nightly/PPML_100days_raw_baseline.R inst/models/nightly/MultigroupWLS.R inst/models/nightly/fm-example2-1.R inst/models/nightly/testPolychoricMatrix.R inst/models/nightly/GREML_infoMat_test.R inst/models/nightly/mplus-ex9.11.R inst/models/nightly/fm-example2-4.R inst/models/nightly/PPML_100days_cov_baseline.R inst/models/nightly/mplus-ex9.23.R inst/models/nightly/DefinitionIloo.R inst/models/nightly/3LatentMultiRegWith2LevelModerator-b.R inst/models/nightly/RAM-3Factor-24Indicators-covdata-a-intervals.R inst/models/nightly/univACErSEM.R inst/models/nightly/3LatentMultiRegWith2LevelModerator-a.R inst/models/nightly/Power2.R inst/models/nightly/ifa-dLL.R inst/models/nightly/BootstrapParallelNightly.R inst/models/nightly/MxTryHardTest.R inst/models/nightly/NelderMeadUnitTesting.R inst/models/nightly/multilevelLatentRegression2.R inst/models/nightly/thresholdModel1Factor5VariateWLS.R inst/models/nightly/mplus-ex9.6.R inst/models/nightly/ifa-2d-mg.R inst/models/nightly/RAM-3Factor-12Indicators-rawdata-a.R inst/models/nightly/RAM-3Factor-12Indicators-covdata-a.R inst/models/nightly/mxPowerDetail.R inst/models/nightly/ifa-latent-2d.R inst/models/nightly/mxSE-defvar.R inst/models/nightly/BootLRT.R inst/models/nightly/test-LatentAR-190605.R inst/models/nightly/xxm-hcfa.R inst/models/nightly/startsTestNoMissing.R inst/models/nightly/ifa-meat-2tier.R inst/models/nightly/LegacyContinuousOnlyWLSTest.R inst/models/nightly/ifa-drm-wide.R inst/models/nightly/MIMIC.R inst/models/nightly/thresholdModel1Factor8Variate.R inst/models/nightly/RAM-3Factor-96Indicators-covdata-a.R inst/models/nightly/PPML_100days_raw.R inst/models/nightly/fm-example2-8.R inst/models/nightly/ifa-fisher-info.R inst/models/nightly/PPML_test1L2M.R inst/models/nightly/mplus-ex9.1.R inst/models/nightly/ifa-ms.R inst/models/nightly/3LatentMultiRegWithContinuousModerator-c.R inst/models/codeRed/umxACE_codeRed.R inst/models/codeRed/fail_on_re-run_entity_already_exists.R inst/models/enormous/RAM-3Factor-192Indicators-covdata-a.R inst/models/enormous/RAM-3Factor-96Indicators-rawdata-a.R inst/models/enormous/ifa-cyh2011-sim1.R inst/models/enormous/ifa-3pl-se.R inst/models/enormous/ifa-grm-se.R inst/models/enormous/wu-neale-2012-lgc.R inst/models/enormous/ifa-4pl-se.R inst/models/enormous/ifa-bifactor-se.R inst/models/enormous/RAM-3Factor-192Indicators-rawdata-a.R inst/models/enormous/ifa-2pl-se.R inst/models/enormous/ifa-cyh2011-sim2.R inst/models/enormous/ot2kSim.R inst/models/enormous/rampart.R inst/models/enormous/invert.R inst/models/enormous/RAM-3Factor-120Indicators-covdata-a.R inst/models/enormous/lib/stderrlib.R inst/models/failing/check_RAM_paths_dont_overwrite.R inst/models/failing/OrdinalLargeSample.R inst/models/failing/test-weight.R inst/models/failing/PPML_test2L4M_MultiLayer.R inst/models/failing/SimpleConfidenceIntervals.R inst/models/failing/PPML_test2L4M.R inst/models/failing/MultilevelLongFormatFailing.R inst/models/failing/PPML_test2L3M.R inst/models/failing/CSOLNPmtcars.R inst/models/failing/mice.R inst/models/failing/thresholdsCross.R inst/models/failing/lacks_mention_of_what_fails/NTF_design.R inst/models/failing/no_longer_able_to_be_run/challengingCI.R inst/models/failing/no_longer_able_to_be_run/PPML_100days.R inst/models/failing/no_longer_able_to_be_run/ExtraOrdinalVars.R inst/models/failing/no_longer_able_to_be_run/categoricalDefinitionTest.R inst/models/failing/no_longer_able_to_be_run/UnivariateTwinAnalysis20090925.R inst/models/failing/no_longer_able_to_be_run/BivariateSaturated_WLSMatrixCov.R inst/models/failing/All_models_that_seem_fine/ComputeOrderError.R inst/models/passing/IntroSEM-OneFactorRaw.R inst/models/passing/Autoregressive_MatrixRaw.R inst/models/passing/NelderMeadTest.R inst/models/passing/GREML--polyphenotype.R inst/models/passing/dependentConstraintTest.R inst/models/passing/ifa-lmp.R inst/models/passing/ConfidenceIntervalsDefVar.R inst/models/passing/NelderMeadErrorTesting.R inst/models/passing/InvalidCovarianceMLObjective.R inst/models/passing/UselessConstraint.R inst/models/passing/defvaralgebra.R inst/models/passing/LGC_PathCov.R inst/models/passing/mxmanual61-a.R inst/models/passing/GREML_intercept_check.R inst/models/passing/AlgebraErrorDetection.R inst/models/passing/IntroSEM-ThreeLatentMediationTest1.R inst/models/passing/IntroSEM-BivariateRaw.R inst/models/passing/JointFIMLRegressionTest.R inst/models/passing/Autoregressive_PathRaw.R inst/models/passing/NA-defvar.R inst/models/passing/jointFactorModelsTest.R inst/models/passing/HMM-basic.R inst/models/passing/SummaryFitStatistics.R inst/models/passing/IntroSEM-BivariateStd.R inst/models/passing/AnalyticConstraintJacobians--PowellBenchmark.R inst/models/passing/omxMnor.R inst/models/passing/MvtGradientTest.R inst/models/passing/ZeroWeightSkip.R inst/models/passing/IntroSEM-OneFactorCov.R inst/models/passing/Autoregressive_PathCov.R inst/models/passing/LCAlazarsfeld-rewrite.R inst/models/passing/RAM-FIML-defvars.R inst/models/passing/ifa-drm-mg2.R inst/models/passing/WLSCompare.R inst/models/passing/LISRELFactorRegressionWithMeans_MatrixRaw.R inst/models/passing/test_mxBootstrapStdizeRAMpaths.R inst/models/passing/redundantConstraintTest.R inst/models/passing/mxmanual61-b.R inst/models/passing/MultilevelUniRandomSlopeInt.R inst/models/passing/xxm-1.R inst/models/passing/Infeasible.R inst/models/passing/mxVersion.R inst/models/passing/testNumericDerivWithConstraintWarning.R inst/models/passing/WeightedWLS.R inst/models/passing/IntroSEM-ThreeLatentMultipleRegTest1.R inst/models/passing/xxm-4.R inst/models/passing/univACEP.R inst/models/passing/bivCorM.R inst/models/passing/mxLog.R inst/models/passing/oneLocusLikelihood.R inst/models/passing/LISRELFactorRegressionWithMeans_Matrix.R inst/models/passing/OnDemandAlgebra.R inst/models/passing/test_thresh_kept_in_order.R inst/models/passing/MultiRegStdTestSE.R inst/models/passing/Rampart1.R inst/models/passing/Autoregressive_Tree_Path.R inst/models/passing/Autoregressive_Transpose_MatrixCov.R inst/models/passing/xxm-2.R inst/models/passing/OneFactorModel_PathCovReverse.R inst/models/passing/Acemix.R inst/models/passing/testAllint.R inst/models/passing/MatrixCreation.R inst/models/passing/EvaluateOnGrid.R inst/models/passing/StateSpaceMissingData.R inst/models/passing/LGC_MatrixCov.R inst/models/passing/check_models_can_be_rerun.R inst/models/passing/RAMInverseTest.R inst/models/passing/IntroSEM-MultivariateRegRaw.R inst/models/passing/FIMLLikelihoodFrontend.R inst/models/passing/Acemix2.R inst/models/passing/xxm-3.R inst/models/passing/LisrelTypeCheck.R inst/models/passing/StateSpaceErrorCheck.R inst/models/passing/ifa-missingdata.R inst/models/passing/checkStandardizedLoadingsEtcetera.R inst/models/passing/SimpleCovariance.R inst/models/passing/InitializationErrorDetection.R inst/models/passing/MultipleGroupML.R inst/models/passing/SanityTest.R inst/models/passing/LISRELExoEndoOnly.R inst/models/passing/NamesReferencesErrorDetection.R inst/models/passing/bivLognormDemo.R inst/models/passing/PartialAnalyticDeriv.R inst/models/passing/DefaultComputePlanTest.R inst/models/passing/UnivariateRandomInterceptWide.R inst/models/passing/LCAlazarsfeld.R inst/models/passing/DefinitionMeans.R inst/models/passing/vectorEqualsT.R inst/models/passing/fm-example2-2.R inst/models/passing/MultipleGroupWLS.R inst/models/passing/LISRELFactorRegressionWithMeansFIMLOrder_MatrixRaw.R inst/models/passing/TwinAnalysisLikelihoodVector.R inst/models/passing/vcov.R inst/models/passing/MLErrorConditions.R inst/models/passing/multinomSE.R inst/models/passing/WLS+CI.R inst/models/passing/RemoveEntriesTest.R inst/models/passing/test-cor.R inst/models/passing/SimpleConstraint.R inst/models/passing/ACEDuplicateMatrices.R inst/models/passing/SimpleConfidenceIntervals.R inst/models/passing/PowerError.R inst/models/passing/StandardErrorsSimple.R inst/models/passing/TestRowObjective.R inst/models/passing/AnalyticConstraintJacobians--Eq_and_Ineq.R inst/models/passing/DataFrame.R inst/models/passing/jointFactorWls.R inst/models/passing/JiggleTest.R inst/models/passing/AlgebraTransformations.R inst/models/passing/joinErrors.R inst/models/passing/BogusDefinitionVariables.R inst/models/passing/rowAlgTest140708.R inst/models/passing/heck-thomas-2015ch4.R inst/models/passing/TestUseOptimizer.R inst/models/passing/OrdinalTest.R inst/models/passing/loadMatrix.R inst/models/passing/MxEvalDefinitionVar.R inst/models/passing/exoPredWLS.R inst/models/passing/Rampart0.R inst/models/passing/IntroSEM-UnivariateStd.R inst/models/passing/regression.R inst/models/passing/FixedAlgebra.R inst/models/passing/InvalidWLS.R inst/models/passing/SaturatedWLSTest.R inst/models/passing/MultipleGroupRAM.R inst/models/passing/SimpleMLAlgebraCIs.R inst/models/passing/Autoregressive_Tree_Matrix.R inst/models/passing/mxmanual31-a.R inst/models/passing/IntroSEM-UnivariateRaw.R inst/models/passing/RenameAndSummary.R inst/models/passing/univACE_drop_helper.R inst/models/passing/acov_regression_test.R inst/models/passing/BootstrapParallel.R inst/models/passing/ModelIndexErrorChecking.R inst/models/passing/UnivHetModTwinAnalysis_MatrixRawOrdNIQmfFv3.R inst/models/passing/startingValues.R inst/models/passing/multilevelLatentRegression.R inst/models/passing/startingValues2.R inst/models/passing/WarmStartTest.R inst/models/passing/FitMultigroup.R inst/models/passing/exoPredWLS2.R inst/models/passing/lmer-1.R inst/models/passing/MultipleGroupRAMconstraint.R inst/models/passing/IntroSEM-ThreeFactorScale1Test.R inst/models/passing/LISRELFactorRegression_Matrix.R inst/models/passing/SimpleAlgebraCIs.R inst/models/passing/maes1998.R inst/models/passing/evalOnGrid.R inst/models/passing/MixtureByEM.R inst/models/passing/RAMObjectiveErrors.R inst/models/passing/MxPath.R inst/models/passing/rfitfunc.R inst/models/passing/AugmentedGREMLfitfunction.R inst/models/passing/HMM-multigroup.R inst/models/passing/mxSE_test.R inst/models/passing/OrdinalPathTest.R inst/models/passing/GREML_partial_gradients_EI.R inst/models/passing/CIduplicates.R inst/models/passing/ifa-grm1.R inst/models/passing/MultivariateConstraint.R inst/models/passing/IntroSEM-ThreeLatentMediationTest2.R inst/models/passing/StateSpaceAlg.R inst/models/passing/IntroSEM-MultiRegRaw.R inst/models/passing/PearsonSelection.R inst/models/passing/MultipleRegression_MatrixRawReverse.R inst/models/passing/OrdinalTestAlgebra.R inst/models/passing/DogChain.R inst/models/passing/GeneralizedEstimatingEquations.R inst/models/passing/IntroSEM-ThreeFactorScale2Test.R inst/models/passing/ContinuousOnlyWLSTest.R inst/models/passing/RawCov.R inst/models/passing/AlgebraDeriv.R inst/models/passing/SubStateSpaceOsc.R inst/models/passing/univSatM.R inst/models/passing/Autoregressive_Transpose_MatrixRaw.R inst/models/passing/ModelRemovePaths.R inst/models/passing/GREML--testStarterFunctionWithMissingData.R inst/models/passing/GREML--151123missingDataRegressionTest.R inst/models/passing/SummaryCheck.R inst/models/passing/SimpleRObjective.R inst/models/passing/IntroSEM-MultiRegStd.R inst/models/passing/Simple--CheckCode6.R inst/models/passing/ifa-allna.R inst/models/passing/Autoregressive_MatrixCov.R inst/models/passing/stdizedRAMpaths--UserProvidedCov.R inst/models/passing/ifa-drm-mg.R inst/models/passing/GREML--minimal_test_model.R inst/models/passing/nonlinearDefinitionTest.R inst/models/passing/BivRegRawTestSE.R inst/models/passing/LAD--CheckCode6.R inst/models/passing/BukinN2_regressiontest.R inst/models/passing/NormalML.R inst/models/passing/TestRowObjectiveExistenceVector.R inst/models/passing/StateSpaceOsc.R inst/models/passing/IgnoreFixedConfidenceIntervals.R inst/models/passing/tangleF.R inst/models/passing/NameParameterOverlap.R inst/models/passing/JointFIMLTest.R inst/models/passing/Tiny_GREML_model_for_full_debug_logging.R inst/models/passing/StateSpaceInputs.R inst/models/passing/lmer-2.R inst/models/passing/IntroSEM-ThreeLatentMultipleRegTest2.R inst/models/passing/FourAAAA.R inst/models/passing/derivFilter.R inst/models/passing/ModelTransformTest.R inst/models/passing/automaticStarts.R inst/models/passing/BivRegStdTestSE.R inst/models/passing/NelderMeadTest--eqConstraint.R inst/models/passing/twoLocusLikelihood.R inst/models/passing/GraphvizTest.R inst/models/passing/DefinitionMeansPath.R inst/models/passing/GREML_partial_gradients.R inst/models/passing/GenSA.R inst/models/passing/HMM-defvar.R inst/models/passing/Substitutions.R inst/models/passing/TwinAnalysis_Multivariate_Matrix_Raw.R inst/models/passing/NelderMeadTest--ineqConstraints.R inst/models/passing/cycle.R inst/models/passing/regularize.R inst/models/passing/CheckpointingEveryIteration.R inst/tools/testNightlyPPML.R inst/tools/testModels.R inst/tools/rprofTestModels.R inst/tools/failTestModels.R inst/tools/memoryTestModels.R inst/tools/parallelTestModels.R inst/tools/dummyFunctions.R inst/tools/testDocs.R inst/tools/OpenMxInstaller.R demo/TwoFactorModel_PathRaw.R demo/LDE.R demo/UnivariateTwinAnalysis_MatrixRaw.R demo/SimpleRegression_PathRaw.R demo/SimpleRegression_MatrixCov.R demo/MatrixAlgebra.R demo/GrowthMixtureModel_MatrixRaw.R demo/TwoLocusLikelihood.R demo/LatentGrowthCurveModel_MatrixRaw.R demo/BivariateSaturated_PathCov.R demo/BivariateSaturated_MatrixCov.R demo/OneFactorOrdinal_MatrixRaw.R demo/LISRELJointFactorModel.R demo/LatentGrowthCurveModel_PathRaw.R demo/MultipleRegression_MatrixRaw.R demo/TwoFactorModel_MatrixRaw.R demo/SimpleRegression_MatrixRaw.R demo/UnivariateSaturated_MatrixRaw.R demo/AlternativeApproaches.R demo/OneFactorOrdinal_MatrixRawRAM.R demo/BivariateSaturated_PathRaw.R demo/OneFactorModel_MatrixCov.R demo/OneFactorPathDemo.R demo/TwoFactorModel_MatrixCov.R demo/UnivariateSaturated_MatrixCov.R demo/OneFactorOrdinal01_MatrixRaw.R demo/OneFactorModel_PathRaw.R demo/DefinitionMeans_MatrixRaw.R demo/RowObjectiveSimpleExamples.R demo/OneFactorJoint_MatrixRawRAM.R demo/SimpleRegression_PathCov.R demo/OneFactorModel_LikelihoodVector.R demo/omxConstrainMLThresholds.R demo/MultivariateRegression_PathCov.R demo/UnivariateTwinAnalysis.R demo/UnivariateTwinAnalysis_PathRaw.R demo/BivariateHeterogeneity_MatrixRaw.R demo/BivariateCorrelation.R demo/BivariateHeterogeneity_PathRaw.R demo/MultipleRegression_PathCov.R demo/BivariateSaturated_MatrixRaw.R demo/RObjectiveLISRELFactorRegression.R demo/mxThreshold.R demo/RowObjectiveFIMLBivariateSaturated.R demo/LatentGrowthCurveModel_PathRaw_ObjectAdd.R demo/MultipleRegression_MatrixCov.R demo/MultivariateRegression_MatrixCov.R demo/GrowthMixtureModel_PathRaw.R demo/BivariateSaturated_MatrixRawCholesky.R demo/BivariateSaturated.R demo/MultivariateRegression_PathRaw.R demo/OneFactorModel_PathCov.R demo/OneFactorOrdinal_PathRaw.R demo/MultivariateRegression_MatrixRaw.R demo/OneLocusLikelihood.R demo/SimpleCheckpoint.R demo/OneFactorJoint_PathRaw.R demo/LatentGrowthCurveModel_PathRaw_ModelRec.R demo/TwoFactorModel_PathCov.R demo/OneFactorMatrixDemo.R demo/UnivariateSaturated_PathCov.R demo/BivariateSaturated_MatrixCovCholesky.R demo/MultipleRegression_PathRaw.R demo/OneFactorModel_MatrixRaw.R demo/UnivariateSaturated_PathRaw.R demo/UnivariateSaturated.R demo/DefinitionMeans_PathRaw.R tests/testthat.R tests/testthat/test-ACELRTCI20160808.R tests/testthat/test-npdWarningWLS.R tests/testthat/test-WLS-acov.R tests/testthat/test-defvar.R tests/testthat/test-ModelIdentification2.R tests/testthat/test-gendata-multilevel.R tests/testthat/test-naAction.R tests/testthat/test-discrete.R tests/testthat/test-268.R tests/testthat/test-simplestCI.R tests/testthat/test-ConstantSubst.R tests/testthat/test-NelderMead--bothConstraintTypes.R tests/testthat/test-GREML_Error_Detection.R tests/testthat/test-loadDataByCol.R tests/testthat/test-pearsonSel.R tests/testthat/test-MatrixErrorDetection.R tests/testthat/test-mxsave.R tests/testthat/test-wls-binary.R tests/testthat/test-dmvnorm.R tests/testthat/test-FactorScores.R tests/testthat/test-DataErrorDetection.R tests/testthat/test-gendata-cov.R tests/testthat/test-ifa-drm1.R tests/testthat/test-LegacyMultipleGroupWLS.R tests/testthat/test-plus-overloading.R tests/testthat/test-mxBounds.R tests/testthat/test-loadDataByRow.R tests/testthat/test-AlgebraComputePassing.R tests/testthat/test-ModelIdentification.R tests/testthat/test-omp.R tests/testthat/test-mxSE.R vignettes/regularization.Rmd vignettes/deriv.Rmd vignettes/reg_mimic.Rmd vignettes/mr.Rmd vignettes/factor_analysis.Rmd tools/xxm-mplus9.6.R tools/covr.R tools/xxm-mplus9.23.R man/imxVerifyModel.Rd man/omxCheckEquals.Rd man/mxComputeSimAnnealing.Rd man/mxEvaluateOnGrid.Rd man/mxConstraint.Rd man/mxComputeJacobian.Rd man/imxHasDefinitionVariable.Rd man/omxHasDefaultComputePlan.Rd man/genericFitDependencies-MxBaseFitFunction-method.Rd man/mxDataWLS.Rd man/MxRAMModel-class.Rd man/mxComputePenaltySearch.Rd man/imxHasNPSOL.Rd man/imxDeparse.Rd man/mxPearsonSelCov.Rd man/vech2full.Rd man/numHess1.Rd man/imxVerifyName.Rd man/mxTryHard.Rd man/omxCheckNamespace.Rd man/mxPath.Rd man/mxGREMLDataHandler.Rd man/mxComputeStandardError.Rd man/omxLogical.Rd man/imxVerifyMatrix.Rd man/imxConvertLabel.Rd man/mxRename.Rd man/omxBrownie.Rd man/MxBaseObjectiveMetaData-class.Rd man/mxJiggle.Rd man/mxStandardizeRAMpaths.Rd man/MxCharOrList-class.Rd man/mxCompare.Rd man/omxConstrainMLThresholds.Rd man/imxIsPath.Rd man/mxComputeNelderMead.Rd man/MxAlgebra-class.Rd man/mxExpectationMixture.Rd man/imxGenSwift.Rd man/imxLocateFunction.Rd man/MxFitFunction-class.Rd man/mxDescribeDataWLS.Rd man/omxCheckError.Rd man/omxSelectRowsAndCols.Rd man/mxNormalQuantiles.Rd man/omxMnor.Rd man/MxModel-class.Rd man/mxComputeReportDeriv.Rd man/MxFitFunctionGREML-class.Rd man/imxPPML.Test.Battery.Rd man/mxPenaltyLASSO.Rd man/imxConDecMatrixSlots.Rd man/MxBaseExpectation-class.Rd man/imxSfClient.Rd man/mxBootstrap.Rd man/myRegDataRaw_data.Rd man/MxPenalty-class.Rd man/mxBootstrapStdizeRAMpaths.Rd man/MxLISRELModel-class.Rd man/example2_data.Rd man/mxComputeOnce.Rd man/mxAutoStart.Rd man/imxSquareMatrix.Rd man/imxGenericModelBuilder.Rd man/imxDefaultGetSlotDisplayNames.Rd man/omxGraphviz.Rd man/MxOptionalCharOrNumber-class.Rd man/mxAlgebraObjective.Rd man/demoTwoFactor_data.Rd man/mxComputeGradientDescent.Rd man/mzmData.Rd man/mxPenaltyZap.Rd man/mxOption.Rd man/imxUpdateModelValues.Rd man/imxReplaceMethod.Rd man/imxGetNumThreads.Rd man/imxEvalByName.Rd man/vech.Rd man/twin_NA_dot_data.Rd man/omxNameAnonymousParameters.Rd man/mxFitFunctionML.Rd man/diag2vec.Rd man/imxSeparatorChar.Rd man/omxSaturatedModel.Rd man/LongitudinalOverdispersedCounts.Rd man/imxReplaceModels.Rd man/omxGetRAMDepth.Rd man/imxDependentModels.Rd man/demoOneFactor_data.Rd man/Named-entity.Rd man/mxLISRELObjective.Rd man/mxRowObjective.Rd man/imxIsMultilevel.Rd man/vechs2full.Rd man/MxCompute-class.Rd man/mxExpectationStateSpace.Rd man/MxConstraint-class.Rd man/myFADataRaw.Rd man/mxTypes.Rd man/imxSparseInvert.Rd man/imxLocateIndex.Rd man/omxReadGRMBin.Rd man/mxComputeLoadMatrix.Rd man/imxDetermineDefaultOptimizer.Rd man/mxFactor.Rd man/MxMatrix-class.Rd man/omxGetBootstrapReplications.Rd man/MxRAMGraph-class.Rd man/mxPenaltySearch.Rd man/tr.Rd man/mxData.Rd man/imxIsDefinitionVariable.Rd man/mxMarginalPoisson.Rd man/omxAugmentDataWithWLSSummary.Rd man/MxCharOrLogical-class.Rd man/mxPenalty.Rd man/imxIsStateSpace.Rd man/imxHasWLS.Rd man/omxCheckSetEquals.Rd man/dzmData.Rd man/mxComputeDefault.Rd man/imxExtractNames.Rd man/omxAssignFirstParameters.Rd man/MxBounds-class.Rd man/MxMMI.Rd man/MxOptionalMatrix-class.Rd man/vec2diag.Rd man/imxHasThresholds.Rd man/MxBaseFitFunction-class.Rd man/imxHasConstraint.Rd man/mxComputeReportExpectation.Rd man/lazarsfeld_data.Rd man/logm.Rd man/imxReservedNames.Rd man/imxModelTypes.Rd man/ordinalTwinData.Rd man/nuclear_twin_design_data.Rd man/imxInitModel.Rd man/mxComputeConfidenceInterval.Rd man/mxEval.Rd man/mzfData.Rd man/MxCompare-class.Rd man/MxVersionType-class.Rd man/imxPenaltyTypes.Rd man/dzfData.Rd man/imxIdentifier.Rd man/multiData1_data.Rd man/omxGetParameters.Rd man/mxPenaltyRidge.Rd man/mxBounds.Rd man/mxComputeSetOriginalStarts.Rd man/mxGetExpected.Rd man/omxCheckTrue.Rd man/imxReverseIdentifier.Rd man/HS.ability.data.Rd man/omxGetNPSOL.Rd man/omxApply.Rd man/myGrowthMixtureData_data.Rd man/MxAlgebraFormula-class.Rd man/imxExtractMethod.Rd man/imxConvertSubstitution.Rd man/mxComputeIterate.Rd man/omxModelDeleteData.Rd man/mxRun.Rd man/mxAlgebraFromString.Rd man/numHess2.Rd man/imxGetSlotDisplayNames.Rd man/imxConstraintRelations.Rd man/omxSapply.Rd man/MxDirectedGraph-class.Rd man/mxComputeNothing.Rd man/mxComputeBootstrap.Rd man/omxRAMtoML.Rd man/mxComputeNumericDeriv.Rd man/imxCreateMatrix.Rd man/mxExpectationGREML.Rd man/mxSimplify2Array.Rd man/mxAvailableOptimizers.Rd man/mxFitFunctionRow.Rd man/mxExpectationHiddenMarkov.Rd man/imxVariableTypes.Rd man/omxParallelCI.Rd man/mxRAMObjective.Rd man/mxCheckIdentification.Rd man/MxOptionalDataFrameOrMatrix-class.Rd man/mxExpectationNormal.Rd man/omxManifestModelByParameterJacobian.Rd man/imxTypeName.Rd man/BaseCompute-class.Rd man/latentMultipleRegExample2_data.Rd man/mxRetro.Rd man/MxExpectationGREML-class.Rd man/mxMatrix.Rd man/mxFitFunctionAlgebra.Rd man/cvectorize.Rd man/mxComputeHessianQuality.Rd man/mxRestore.Rd man/mxGenerateData.Rd man/MxOptionalInteger-class.Rd man/mxComputeGenerateData.Rd man/imxUntitledName.Rd man/imxCheckMatrices.Rd man/mxComputeLoadData.Rd man/expm.Rd man/mxComputeLoadContext.Rd man/Oscillator_data.Rd man/MxExpectationXclass.Rd man/mxFactorScores.Rd man/mxAlgebra.Rd man/imxSameType.Rd man/omxAllInt.Rd man/mxSave.Rd man/imxModelBuilder.Rd man/imxOriginalMx.Rd man/myLongitudinalData_data.Rd man/mxMI.Rd man/imxPPML.Test.Test.Rd man/jointdata_data.Rd man/omxCheckWarning.Rd man/imxPPML.Rd man/mxSetDefaultOptions.Rd man/mxFIMLObjective.Rd man/mxMarginalNegativeBinomial.Rd man/mxComputeCheckpoint.Rd man/MxDataStatic-class.Rd man/imxUntitledNumberReset.Rd man/imxAutoOptionValue.Rd man/mxVersion.Rd man/twinData.Rd man/omxCheckWithinPercentError.Rd man/mxMakeNames.Rd man/predict.MxModel.Rd man/MxOptionalDataFrame-class.Rd man/imxExtractSlot.Rd man/latentMultipleRegExample1_data.Rd man/MxOptionalLogical-class.Rd man/myTwinData_data.Rd man/imxGentleResize.Rd man/omxSetParameters.Rd man/omxDetectCores.Rd man/imxWlsChiSquare.Rd man/mxFitFunctionMultigroup.Rd man/imxLocateLabel.Rd man/mxExpectationRAM.Rd man/mxDataDynamic.Rd man/imxVerifyReference.Rd man/omxMatrixOperations.Rd man/omxSymbolTable.Rd man/imxReportProgress.Rd man/imxDataTypes.Rd man/mxComputeTryHard.Rd man/imxDmvnorm.Rd man/mxBootstrapEval.Rd man/imxLookupSymbolTable.Rd man/MxInterval-class.Rd man/summary.MxModel.Rd man/imxWlsStandardErrors.Rd man/MxFlatModel-class.Rd man/imxFreezeModel.Rd man/MxCI-class.Rd man/omxLocateParameters.Rd man/imxConvertIdentifier.Rd man/dzoData.Rd man/imxUntitledNumber.Rd man/mxComputeSequence.Rd man/Bollen_data.Rd man/mxMLObjective.Rd man/imxAddDependency.Rd man/mxFitFunctionWLS.Rd man/mxFitFunctionGREML.Rd man/factorExample1_data.Rd man/myAutoregressiveData_data.Rd man/example1_data.Rd man/MxData-class.Rd man/mxComputeLoop.Rd man/rvectorize.Rd man/MxListOrNull-class.Rd man/omxLapply.Rd man/omxQuotes.Rd man/mxExpectationBA81.Rd man/mxSE.Rd man/mxCI.Rd man/imxRobustSE.Rd man/factorScaleExample1_data.Rd man/imxFlattenModel.Rd man/as.statusCode.Rd man/mxKalmanScores.Rd man/mxPower.Rd man/MxOptionalNumeric-class.Rd man/mxComputeTryCatch.Rd man/mxPenaltyElasticNet.Rd man/mxComputeEM.Rd man/mxParametricBootstrap.Rd man/mxFitFunctionR.Rd man/factorScaleExample2_data.Rd man/myGrowthKnownClassData_data.Rd man/imxReplaceSlot.Rd man/MxCharOrNumber-class.Rd man/MxOptionalChar-class.Rd man/imxExtractReferences.Rd man/eigenvec.Rd man/imxIndependentModels.Rd man/imxGenerateNamespace.Rd man/omxCheckIdentical.Rd man/imxSymmetricMatrix.Rd man/imxPreprocessModel.Rd man/mxThreshold.Rd man/imxGenerateLabels.Rd man/MxBaseNamed-class.Rd man/imxCheckVariables.Rd man/omxRMSEA.Rd man/imxRowGradients.Rd man/omxBuildAutoStartModel.Rd man/imxSimpleRAMPredicate.Rd man/omxCheckCloseEnough.Rd man/mxExpectationStateSpaceContinuousTime.Rd man/mxExpectationLISREL.Rd man/DiscreteBase-class.Rd man/mxComputeNewtonRaphson.Rd man/mxRObjective.Rd man/myRegData_data.Rd man/vechs.Rd man/OpenMx.Rd man/imxLog.Rd man/imxHasOpenMP.Rd man/nhanesDemo.Rd man/mxModel.Rd man/omxDefaultComputePlan.Rd man/imxMpiWrap.Rd