R/get_median_transcript_expression.R

In gtexr: Query the GTEx Portal API

#' Get Median Transcript Expression
#'
#' @description Find median transcript expression data of all known transcripts
#' of a gene.
#'
#' - Returns median normalized expression in tissues of all known transcripts of a given gene.
#' - Results may be filtered by dataset or tissue.
#'
#' By default, this service queries the latest GTEx release.
#'
#' [GTEx Portal API
#' documentation](https://gtexportal.org/api/v2/redoc#tag/Expression-Data-Endpoints/operation/get_median_transcript_expression_api_v2_expression_medianTranscriptExpression_get)
#'
#' @inheritParams gtexr_arguments
#'
#' @return A tibble.
#' @export
#' @family Expression Data Endpoints
#'
#' @examples
#' \dontrun{
#' get_median_transcript_expression(gencodeIds = "ENSG00000132693.12")
#' }
get_median_transcript_expression <- function(gencodeIds,
                                             datasetId = "gtex_v8",
                                             tissueSiteDetailIds = NULL,
                                             page = 0,
                                             itemsPerPage = 250){
  gtex_query(endpoint = "expression/medianTranscriptExpression")
}