tests/testthat/test-get_independent_eqtl.R

In gtexr: Query the GTEx Portal API

test_that("`get_independent_eqtl()` returns tibble with expected colnames",
          {
            skip_if_offline()
            result <- suppressWarnings(get_independent_eqtl(gencodeIds = "ENSG00000203782.5", itemsPerPage = 1))

            expect_s3_class(result, "tbl_df")

            expect_identical(
              names(result),
              c(
                "gencodeId",
                "geneSymbol",
                "variantId",
                "snpId",
                "tissueSiteDetailId",
                "ontologyId",
                "rank",
                "tssDistance",
                "maf",
                "pValue",
                "nes",
                "chromosome",
                "pos",
                "datasetId"
              )
            )
          })