tests/testthat/test-get_neighbor_gene.R

In gtexr: Query the GTEx Portal API

test_that("`get_gwas_catalog_by_location()` returns tibble with expected colnames",
          {
            skip_if_offline()
            result <- get_neighbor_gene(
              pos = 1000000,
              chromosome = "chr1",
              bp_window = 10000,
              itemsPerPage = 1
            ) |>
              suppressWarnings()

            expect_s3_class(result, "tbl_df")

            expect_identical(
              names(result),
              c(
                "chromosome",
                "dataSource",
                "description",
                "end",
                "gencodeId",
                "gencodeVersion",
                "geneStatus",
                "geneSymbol",
                "geneSymbolUpper",
                "geneType",
                "genomeBuild",
                "start",
                "strand",
                "tss"
              )
            )
          })