API for utr.annotation
Annotate Variants in the Untranslated Regions
| Global functions | |
|---|---|
| checkIfGainOrLoseAfterAlt | Man page Source code |
| checkIfGainOrLoseAfterAltOneVariant | Man page Source code |
| checkIfLostCodonAfterAlt | Man page Source code |
| checkIfLostCodonAfterAltOneVariant | Man page Source code |
| checkIfRefMatchAndAltFragment | Man page Source code |
| checkInputValid | Man page Source code |
| concatenateAnnotationResult | Man page Source code |
| countDNAPattern | Man page Source code |
| countDNAPatternInAlt | Man page Source code |
| countDNAPatternInAltOneVariant | Man page Source code |
| countDNAPatternOneVariant | Man page Source code |
| createEnsDbFromAH | Man page Source code |
| getAltSequence | Man page Source code |
| getCodon | Man page Source code |
| getCodonInAlt | Man page Source code |
| getCodonInAltOneVariant | Man page Source code |
| getCodonOneVariant | Man page Source code |
| getEnsembl | Man page Source code |
| getFeatureFromInfo | Man page Source code |
| getKozakPWM | Man page Source code |
| getKozakScore | Man page Source code |
| getKozakScoreOneVariant | Man page Source code |
| getLatestEnsemblVersion | Man page Source code |
| getOrgName | Man page Source code |
| getRegionsForDiscretePos | Man page Source code |
| getSeqTable | Man page Source code |
| getTSSKozak | Man page Source code |
| getTSSKozakOneVariant | Man page Source code |
| getTranscriptIds | Man page Source code |
| getTranscriptIdsForCodonVariants | Man page Source code |
| getTranscriptIdsForOneCodonVariant | Man page Source code |
| getTranscriptIdsForOneTSSKozakVariant | Man page Source code |
| getTranscriptIdsForOneUTRVariant | Man page Source code |
| getTranscriptIdsForTSSKozakVariants | Man page Source code |
| getTranscriptIdsForUTRVariants | Man page Source code |
| getTranscriptIdsOneVariant | Man page Source code |
| getTrasncriptsRegions | Man page Source code |
| get_conservation_scores | Man page Source code |
| initUTRAnnotation | Man page Source code |
| init_backend | Man page Source code |
| inverse_transform | Man page Source code |
| one_hot_encode | Man page Source code |
| partitionVariantFile | Man page Source code |
| predictMRL | Man page Source code |
| predictMRLInAlt | Man page Source code |
| predictMRLInAltOneVariant | Man page Source code |
| predictMRLOneVariant | Man page Source code |
| queryEnsemblInfo | Man page Source code |
| readVCFData | Man page Source code |
| readVariantData | Man page Source code |
| runUTRAnnotation | Man page Source code |
| splitRowsIfMultiFeature | Man page Source code |
| validateTranscripts | Man page Source code |
