Description Usage Arguments Value
View source: R/get_genome_db.R
validateTranscripts
checks 1) whether a transcript has a peptide sequence, 2) whether the peptide sequence ends with "*", 3) whether the peptide starts with "M"
1 | validateTranscripts(transcriptIds, species, ensemblVersion, dataDir = "data")
|
transcriptIds |
a list of Ensembl transcript ids |
species |
human or mouse |
ensemblVersion |
Ensembl database version |
transcript_regions with additional flags: protein_coding, valid_startcodon, valid_stopcodon
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