validateTranscripts: Checking whether a transcript is valid
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
View source: R/get_genome_db.R
Description
validateTranscripts checks 1) whether a transcript has a peptide sequence, 2) whether the peptide sequence ends with "*", 3) whether the peptide starts with "M"
Usage
1
validateTranscripts(transcriptIds, species, ensemblVersion, dataDir = "data")
Arguments
transcriptIds
a list of Ensembl transcript ids
species
human or mouse
ensemblVersion
Ensembl database version
Value
transcript_regions with additional flags: protein_coding, valid_startcodon, valid_stopcodon
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/get_genome_db.R
Description
validateTranscripts checks 1) whether a transcript has a peptide sequence, 2) whether the peptide sequence ends with "*", 3) whether the peptide starts with "M"
Usage
1 | validateTranscripts(transcriptIds, species, ensemblVersion, dataDir = "data")
|
Arguments
transcriptIds |
a list of Ensembl transcript ids |
species |
human or mouse |
ensemblVersion |
Ensembl database version |
Value
transcript_regions with additional flags: protein_coding, valid_startcodon, valid_stopcodon
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.