API for RajLabMSSM/echodata
echoverse module: Fine-mapping data access and formatting
| Global functions | |
|---|---|
| .onLoad | Source code |
| BST1 | Man page |
| BST1_LD_matrix | Man page |
| LRRK2 | Man page |
| MEX3C | Man page |
| R.utils | Man page |
| assign_lead_snp | Man page |
| auto_topSNPs_sub | Man page Source code |
| biomart_geneInfo | Man page Source code |
| calculate_tstat | Man page Source code |
| column_dictionary | Man page Source code |
| construct_colmap | Man page Source code |
| coords_to_rsids | Man page Source code |
| createDT | Man page Source code |
| detect_genes | Man page Source code |
| dt_to_granges | Man page Source code |
| example_fullSS | Man page Source code |
| extract_loci | Man page Source code |
| fillNA_CS_PP | Man page Source code |
| filter_snps | Man page Source code |
| find_consensus_snps | Man page Source code |
| find_consensus_snps_no_polyfun | Man page Source code |
| find_top_consensus | Man page Source code |
| fix_coltypes | Man page Source code |
| gene_locus_list | Man page Source code |
| gene_trimmer | Man page Source code |
| genome_wide_dir | Man page |
| get_CS_bins | Man page Source code |
| get_CS_counts | Man page Source code |
| get_Kunkle2019 | Man page Source code |
| get_Kunkle2019_coloc | Man page Source code |
| get_Nalls2019 | Man page Source code |
| get_Nalls2019_coloc | Man page Source code |
| get_Nalls2019_loci | Man page Source code |
| get_Nalls2019_merged | Man page Source code |
| get_SNPgroup_counts | Man page Source code |
| get_data | Man page Source code |
| get_header | Man page Source code |
| get_nrows | Man page Source code |
| get_os | Man page Source code |
| get_sample_size | Man page Source code |
| granges_to_bed | Man page Source code |
| import_topSNPs | Man page Source code |
| import_topSNPs_manual_rename | Source code |
| is_empty | Man page Source code |
| is_ggbio | Man page Source code |
| is_ggplot | Man page Source code |
| is_granges | Man page Source code |
| is_local | Man page Source code |
| is_melted | Source code |
| is_url | Man page Source code |
| limit_snps | Man page Source code |
| locus_dir | Man page |
| melt_finemapping_results | Man page Source code |
| merge_finemapping_results | Man page Source code |
| merge_finemapping_results_each | Man page Source code |
| merge_robust | Man page Source code |
| message_parallel | Man page Source code |
| messager | Source code |
| mungesumstats_check_syn | Man page Source code |
| mungesumstats_to_echolocatoR | Man page Source code |
| order_loci | Man page Source code |
| order_methods | Source code |
| portal_metadata | Man page Source code |
| portal_query | Man page Source code |
| preview | Man page Source code |
| read_parquet | Man page Source code |
| reassign_lead_snps | Man page Source code |
| results_report | Man page Source code |
| set_permissions | Man page Source code |
| snp_group_colorDict | Man page Source code |
| snp_group_filters | Man page Source code |
| standardize | Man page Source code |
| standardize_1snp_per_coord | Source code |
| standardize_a1_a2 | Source code |
| standardize_coltypes | Source code |
| standardize_gene | Man page Source code |
| standardize_gene_col | Source code |
| standardize_gene_locus_cols | Man page Source code |
| standardize_maf | Man page Source code |
| standardize_main_colnames | Source code |
| standardize_ncas_ncon | Source code |
| standardize_p | Source code |
| standardize_proportion_cases | Source code |
| standardize_stderr | Source code |
| standardize_trimws | Source code |
| sumstatsColHeaders | Man page |
| topSNPs_Kunkle2019 | Man page |
| topSNPs_Nalls2019 | Man page |
| topSNPs_Nalls2019_raw | Man page |
| topSNPs_reader | Man page Source code |
| unlist_dt | Man page Source code |
| update_cols | Man page Source code |
| write_parquet | Man page Source code |
