API for demuellae/muRtools
Mueller's R tools
| Global functions | |
|---|---|
| aggregateDf | Man page Source code |
| bed2GRanges | Man page Source code |
| bedTobigBed | Man page Source code |
| camel2underscore | Man page Source code |
| cfg_parse_commandr_slurm | Source code |
| cfg_parse_directory | Source code |
| cfg_parse_directory_create | Source code |
| cfg_parse_directory_existing | Source code |
| cfg_parse_directory_non_existing | Source code |
| cfg_parse_directory_warn_existing | Source code |
| cfg_parse_file | Source code |
| cfg_parse_file_existing | Source code |
| cfg_parse_file_non_existing | Source code |
| cfg_parse_file_warn_existing | Source code |
| cfg_parse_free | Source code |
| cfg_parse_json_colormap | Source code |
| cfg_parse_string | Source code |
| chordDiagramFromContingencyTable | Man page Source code |
| col.text.2.hex | Man page Source code |
| colgrad.methylation.rb | Man page |
| colgrad.methylation.yb | Man page |
| colorize.value | Man page Source code |
| colpal,colpal.cb,colpal.colpal.bde | Man page |
| colpal.PhFr.a | Man page |
| colpal.bde | Man page |
| colpal.cb | Man page |
| colpal.cont | Man page Source code |
| colpal.corpid | Man page |
| colpal.histone | Man page |
| colpal.histone,colpal.histone.ihec,colgrad.methylation.rb,colgra | Man page |
| colpal.histone.ihec | Man page |
| colpal.iwh.cb01 | Man page |
| colpal.miniblaze | Man page |
| colpal.mu.cat | Man page |
| colpal.nature | Man page |
| colpal.solarextra | Man page |
| colpals.games | Man page |
| colpals.topo | Man page |
| combinationList | Man page Source code |
| containsHistoneModStr | Man page Source code |
| containsHistoneModStr,getHistoneFromHistoneModStr,getAaPosFromHi | Man page |
| countPairwiseOverlaps | Man page Source code |
| create.densityScatter | Man page Source code |
| densRanks | Man page |
| df2granges | Man page Source code |
| diagDivCellHeatmap | Man page Source code |
| diagDivHeatmap | Man page Source code |
| dist.correlation | Man page Source code |
| downloadLolaDbs | Man page Source code |
| get.encode.cell.table | Man page Source code |
| getAaPosFromHistoneModStr | Man page Source code |
| getAaTypeFromHistoneModStr | Man page Source code |
| getAnnotGrl.gencode | Man page Source code |
| getAssocTestRes.pca | Man page Source code |
| getCellTypesFromLolaDb | Man page Source code |
| getClusteringDendrogram | Man page Source code |
| getColorFun | Man page Source code |
| getConfig | Man page Source code |
| getDimRedCoords.mds | Man page Source code |
| getDimRedCoords.pca | Man page Source code |
| getDimRedCoords.tsne | Man page Source code |
| getDimRedCoords.umap | Man page Source code |
| getDimRedPlot | Man page Source code |
| getGeneAnnotMap | Man page Source code |
| getGenomeGr | Man page Source code |
| getGenomeObject | Man page Source code |
| getHashString | Man page Source code |
| getHistoneFromHistoneModStr | Man page Source code |
| getModFromHistoneModStr | Man page Source code |
| getNamesFromLolaDb | Man page Source code |
| getPointDensity | Man page Source code |
| getRegionSet | Man page Source code |
| getRelatedAnaDirFromConfig | Man page Source code |
| getRoadmapMdFromId | Source code |
| getScriptDependencyGraph | Source code |
| getSeqlengths4assembly | Man page Source code |
| getTargetFromLolaDb | Man page Source code |
| getTilingRegions | Man page Source code |
| getTxDb.gencode | Man page Source code |
| ggAutoColorScale | Man page Source code |
| ggMessagePlot | Man page Source code |
| ggplot2.distr | Man page Source code |
| ggplot2.heatmap | Man page Source code |
| ggsave4doc | Man page Source code |
| ggtemp | Man page Source code |
| goEnrichment | Man page Source code |
| grGeneAnnot | Man page Source code |
| grLiftOver | Man page Source code |
| grSignedDistance | Man page Source code |
| grTile | Man page Source code |
| granges2bed | Man page Source code |
| granges2bed.igv | Man page Source code |
| granges2igv | Man page Source code |
| indicesInList | Man page Source code |
| kde.plot | Man page |
| kde.plot.matrix | Man page Source code |
| kde.plot.simple | Man page Source code |
| loadLolaDbs | Man page Source code |
| loadRnBeadsAnalysis | Man page Source code |
| lolaBarPlot | Man page Source code |
| lolaBoxPlotPerTarget | Man page Source code |
| lolaPrepareDataFrameForPlot | Source code |
| lolaRegionSetHeatmap | Man page Source code |
| lolaRegionSetHeatmap2 | Source code |
| lolaVolcanoPlot | Man page Source code |
| makeTrans | Man page Source code |
| matchHistoneModStr | Man page Source code |
| matchStrand | Man page Source code |
| muRtools | Man page |
| normalize.str | Man page Source code |
| normalizeHistoneModStr | Man page Source code |
| normalizePercentile | Man page Source code |
| normalizeRank | Man page Source code |
| pairsDensCor | Man page Source code |
| panel.cor.col | Man page Source code |
| panel.density | Man page Source code |
| parse.cl.args | Man page Source code |
| parse.encode.cv.file | Man page Source code |
| pdftemp | Man page Source code |
| plotAllDimRed | Man page Source code |
| plotColpal | Man page Source code |
| plotCorPhm | Man page Source code |
| plotDimRed | Man page Source code |
| plotFisherTest | Man page Source code |
| pngtemp | Man page Source code |
| prcomp_iter_impute_scbs | Source code |
| randomGroupedHeatmap | Man page Source code |
| readTab | Man page Source code |
| reloadPackage | Man page Source code |
| rnb.xml2options.backwardsCompatible | Source code |
| rowTtest | Man page Source code |
| runLOLA_list | Man page Source code |
| scatter.twogroups | Man page Source code |
| setGenomeProps | Man page Source code |
| sortGr | Man page Source code |
| strTrim | Man page Source code |
| summarizeSetOverlap | Man page Source code |
| testAssoc | Man page Source code |
| textSearch | Man page Source code |
| theme_nogrid | Man page Source code |
| umapParamGridReport | Man page Source code |
| underscore2camel | Man page Source code |
| unloadPackage | Man page Source code |
| writeTab | Man page Source code |
