Files in demuellae/muRtools

Mueller's R tools

R/analysisConfig.R R/clustering.R R/colors.R R/commandLine.R R/develTools.R R/dimRed.R R/encodeProjectTools.R R/enrichmentTools.R R/epigeneticsConfig.R R/epigeneticsData.R R/epigeneticsUtils.R R/genomicRegions.R R/heatmaps.R R/listOps.R R/lolaUtils.R R/miscPlots.R R/muKDEplots.R R/muMakeTrans.R R/muPairs.R R/muRtools.R R/muScatter.R R/mu_ggplots2_ext.R R/normalize.R R/rnbeads.R R/statTest.R R/stringOps.R R/txdb.R R/wrappers.R README.md man/HistoneModStr.Rd man/aggregateDf.Rd man/bed2GRanges.Rd man/bedTobigBed.Rd man/camel2underscore.Rd man/chordDiagramFromContingencyTable.Rd man/col.text.2.hex.Rd man/colorize.value.Rd man/colpal.Rd man/colpal.cont.Rd man/colpal.epigenetics.Rd man/combinationList.Rd man/countPairwiseOverlaps.Rd man/create.densityScatter.Rd man/densRanks.Rd man/df2granges.Rd man/diagDivCellHeatmap.Rd man/diagDivHeatmap.Rd man/dist.correlation.Rd man/downloadLolaDbs.Rd man/get.encode.cell.table.Rd man/getAnnotGrl.gencode.Rd man/getAssocTestRes.pca.Rd man/getCellTypesFromLolaDb.Rd man/getClusteringDendrogram.Rd man/getColorFun.Rd man/getConfig.Rd man/getDimRedCoords.mds.Rd man/getDimRedCoords.pca.Rd man/getDimRedCoords.tsne.Rd man/getDimRedCoords.umap.Rd man/getDimRedPlot.Rd man/getGeneAnnotMap.Rd man/getGenomeGr.Rd man/getGenomeObject.Rd man/getHashString.Rd man/getNamesFromLolaDb.Rd man/getPointDensity.Rd man/getRegionSet.Rd man/getRelatedAnaDirFromConfig.Rd man/getSeqlengths4assembly.Rd man/getTargetFromLolaDb.Rd man/getTilingRegions.Rd man/getTxDb.gencode.Rd man/ggAutoColorScale.Rd man/ggMessagePlot.Rd man/ggplot2.distr.Rd man/ggplot2.heatmap.Rd man/ggsave4doc.Rd man/ggtemp.Rd man/goEnrichment.Rd man/grGeneAnnot.Rd man/grLiftOver.Rd man/grSignedDistance.Rd man/grTile.Rd man/granges2bed.Rd man/granges2bed.igv.Rd man/granges2igv.Rd man/indicesInList.Rd man/kde.plot.Rd man/loadLolaDbs.Rd man/loadRnBeadsAnalysis.Rd man/lolaBarPlot.Rd man/lolaBoxPlotPerTarget.Rd man/lolaRegionSetHeatmap.Rd man/lolaVolcanoPlot.Rd man/makeTrans.Rd man/matchStrand.Rd man/muRtools.Rd man/normalize.str.Rd man/normalizePercentile.Rd man/normalizeRank.Rd man/pairsDensCor.Rd man/panel.cor.col.Rd man/panel.density.Rd man/parse.cl.args.Rd man/parse.encode.cv.file.Rd man/pdftemp.Rd man/plotAllDimRed.Rd man/plotColpal.Rd man/plotCorPhm.Rd man/plotDimRed.Rd man/plotFisherTest.Rd man/pngtemp.Rd man/randomGroupedHeatmap.Rd man/readTab.Rd man/reloadPackage.Rd man/rowTtest.Rd man/runLOLA_list.Rd man/scatter.twogroups.Rd man/setGenomeProps.Rd man/sortGr.Rd man/strTrim.Rd man/summarizeSetOverlap.Rd man/testAssoc.Rd man/textSearch.Rd man/theme_nogrid.Rd man/umapParamGridReport.Rd man/underscore2camel.Rd man/unloadPackage.Rd man/writeTab.Rd