Files in kgellatl/SignallingSingleCell

Network Analysis for single cell RNA sequencing Data (sc-RNASeq)

R/agg_gene.R R/analyze_rl_network.R R/build_rl_network.R R/calc_agg_bulk.R R/calc_genestats.R R/calc_libsize.R R/calc_rl_connections.R R/cell_cor.R R/cell_net.R R/cluster_cell_net.R R/cluster_sc.R R/construct_ex_sc.R R/construct_ex_sc_10x.R R/detect_doublets.R R/dim_reduce.R R/edgeRDE.R R/extract_communities.R R/extract_nodes.R R/filter_rl_network.R R/findDEgenes.R R/findDEmarkers.R R/flow_filter.R R/flow_svm.R R/id_markers.R R/id_rl.R R/merge_ex_sc.R R/norm_sc.R R/plotViolin.R R/plot_barplot.R R/plot_density.R R/plot_density_ridge.R R/plot_dotplot.R R/plot_gene_dots.R R/plot_go_heatmap.R R/plot_heatmap.R R/plot_rl_summary.R R/plot_scatter.R R/plot_tsne_gene.R R/plot_tsne_metadata.R R/plot_violin.R R/plot_volcano.R R/pre_filter.R R/reduce_cell_net.R R/return_agg_gene.R R/return_markers.R R/return_subset_genes.R R/save_ggplot.R R/search_gene.R R/subset_ex_sc.R R/subset_genes.R man/agg_gene.Rd man/analyze_rl_network.Rd man/build_rl_network.Rd man/calc_agg_bulk.Rd man/calc_genestats.Rd man/calc_libsize.Rd man/calc_rl_connections.Rd man/cell_cor.Rd man/cell_net.Rd man/cluster_cell_net.Rd man/cluster_sc.Rd man/construct_ex_sc.Rd man/construct_ex_sc_10x.Rd man/detect_doublets.Rd man/dim_reduce.Rd man/edgeRDE.Rd man/extract_communities.Rd man/extract_nodes.Rd man/filter_rl_network.Rd man/findDEgenes.Rd man/findDEmarkers.Rd man/flow_filter.Rd man/flow_svm.Rd man/id_markers.Rd man/id_rl.Rd man/merge_ex_sc.Rd man/norm_sc.Rd man/plotViolin.Rd man/plot_barplot.Rd man/plot_density.Rd man/plot_density_ridge.Rd man/plot_dotplot.Rd man/plot_gene_dots.Rd man/plot_go_heatmap.Rd man/plot_heatmap.Rd man/plot_rl_summary.Rd man/plot_scatter.Rd man/plot_tsne_gene.Rd man/plot_tsne_metadata.Rd man/plot_violin.Rd man/plot_volcano.Rd man/pre_filter.Rd man/reduce_cell_net.Rd man/return_agg_gene.Rd man/return_markers.Rd man/return_subset_genes.Rd man/save_ggplot.Rd man/search_gene.Rd man/subset_ex_sc.Rd man/subset_genes.Rd vignettes/SignallingSingleCell_Thesis_Vignette.Rmd vignettes/SignallingSingleCell_vignette.Rmd vignettes/phs002455_vignette.Rmd