API for stefpeschel/NetCoMi
Network Construction and Comparison for Microbiome Data
| Global functions | |
|---|---|
| .addOrbRect | Source code |
| .boottest | Man page Source code |
| .calcAssociation | Man page Source code |
| .calcDiffProps | Source code |
| .calcJaccard | Source code |
| .calcPermPval | Source code |
| .calcProps | Man page Source code |
| .checkArg | Source code |
| .checkArgsCreateAP | Source code |
| .checkArgsDiffnet | Source code |
| .checkArgsNetAna | Source code |
| .checkArgsNetComp | Source code |
| .checkArgsNetConst | Source code |
| .checkArgsPlotDiff | Source code |
| .checkArgsPlotHeat | Source code |
| .checkArgsPlotMNP | Source code |
| .checkPackNetConst | Source code |
| .checkPlausNetConst | Source code |
| .cleanPermMat | Source code |
| .diffConnectNetwork | Source code |
| .diffConnectPairs | Source code |
| .diffConnectVariables | Source code |
| .filterEdges | Source code |
| .filterNodes | Source code |
| .filterSamples | Source code |
| .filterTaxa | Source code |
| .firstUnequalElement | Source code |
| .getClustCols | Source code |
| .getMatchArgTxt | Source code |
| .getMaxCombMatch | Source code |
| .getNodeSize | Source code |
| .getOrbcounts | Source code |
| .getPermGroupMat | Source code |
| .getSigCode | Source code |
| .getVecNames | Man page Source code |
| .normCounts | Source code |
| .permTestDiffAsso | Man page Source code |
| .scaleDiss | Source code |
| .sigTestRand | Source code |
| .sing2doubDigit | Source code |
| .sparsify | Source code |
| .suppress_warnings | Source code |
| .transToAdja | Source code |
| .transToDiss | Source code |
| .transToSim | Source code |
| .zeroTreat | Source code |
| NetCoMi | Man page |
| NetCoMi-package | Man page |
| calcGCD | Man page Source code |
| calcGCM | Man page Source code |
| cclasso | Man page Source code |
| cclasso.sub | Source code |
| colToTransp | Man page Source code |
| createAssoPerm | Man page Source code |
| diffnet | Man page Source code |
| editLabels | Man page Source code |
| gcoda | Man page Source code |
| gcoda_sub | Source code |
| installNetCoMiPacks | Man page Source code |
| multAdjust | Man page Source code |
| netAnalyze | Man page Source code |
| netCompare | Man page Source code |
| netConstruct | Man page Source code |
| obj_gcoda | Source code |
| plot | Man page |
| plot.diffnet | Man page Source code |
| plot.microNetProps | Man page Source code |
| plotHeat | Man page Source code |
| print.GCD | Man page Source code |
| print.summary.microNetComp | Man page Source code |
| print.summary.microNetProps | Man page Source code |
| renameTaxa | Man page Source code |
| summary.microNetComp | Man page Source code |
| summary.microNetProps | Man page Source code |
| testGCM | Man page Source code |
