stnava/ANTsR
ANTs in R: Quantification Tools for Biomedical Images

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API for stnava/ANTsR
ANTs in R: Quantification Tools for Biomedical Images

Global functions
!,antsImage-method Man page
!=,ANY,antsImage-method Man page
!=,antsImage,ANY-method Man page
!=,antsImage,antsImage-method Man page
!=,antsImage,array-method Man page
!=,antsImage,list-method Man page
!=,array,antsImage-method Man page
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%%,antsImage,numeric-method Man page
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%/%,antsImage,antsImage-method Man page
%/%,antsImage,numeric-method Man page
%/%,numeric,antsImage-method Man page
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*,antsImage,antsImage-method Man page
*,antsImage,numeric-method Man page
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+,antsImage,antsImage-method Man page
+,antsImage,numeric-method Man page
+,numeric,antsImage-method Man page
-,antsImage,antsImage-method Man page
-,antsImage,numeric-method Man page
-,numeric,antsImage-method Man page
.LabelClustersUniquely Source code
.affine2distance Source code
.all_def Source code
.antsMotionCorrStats Source code
.antsMotionCorrStats0 Source code
.ants_brain_extraction Source code
.antsr_resting_state_corr_eigenanat Source code
.antsrmakeRandomString Source code
.any_def Source code
.arCorrection Source code
.binarizeSNPs Source code
.bootSmooth Source code
.conjGradS Source code
.cosineDist Source code Source code
.diffmat Source code
.eanatcolMaxs Source code
.eanatsparsify Source code
.eanatsparsifyv Source code
.extractDenseNetwork Source code
.getNetwork Source code
.get_perfusion_predictors Source code
.getvertices Source code
.gramschmidt Source code
.helpn3BiasFieldCorrection2 Source code
.helpn4BiasFieldCorrection Source code
.hyperButt Source code
.int_antsProcessArguments Man page Source code
.lowrank Source code
.makeDiffGraph Source code
.matrixSeg Source code
.max_def Source code
.mergeLabels Source code
.min_def Source code
.motion_correction Man page Source code
.networkCorrelation Source code
.networkCovariance Source code
.networkOverlap Source code
.onAttach Source code
.prod_def Source code
.range_def Source code
.reduceNetwork Source code
.simlr3 Source code
.smoothImageHelper Source code
.snapColors Source code
.sparseDecom2helper2 Source code
.sum_def Source code
.summarizeClusters Source code
.xuvtHelper Source code
/,antsImage,antsImage-method Man page
/,antsImage,numeric-method Man page
/,numeric,antsImage-method Man page
<,ANY,antsImage-method Man page
<,antsImage,ANY-method Man page
<,antsImage,antsImage-method Man page
<,antsImage,array-method Man page
<,antsImage,list-method Man page
<,array,antsImage-method Man page
<=,ANY,antsImage-method Man page
<=,antsImage,ANY-method Man page
<=,antsImage,antsImage-method Man page
<=,antsImage,array-method Man page
<=,antsImage,list-method Man page
<=,array,antsImage-method Man page
==,ANY,antsImage-method Man page
==,antsImage,ANY-method Man page
==,antsImage,antsImage-method Man page
==,antsImage,array-method Man page
==,antsImage,list-method Man page
==,array,antsImage-method Man page
>,ANY,antsImage-method Man page
>,antsImage,ANY-method Man page
>,antsImage,antsImage-method Man page
>,antsImage,array-method Man page
>,antsImage,list-method Man page
>,array,antsImage-method Man page
>=,ANY,antsImage-method Man page
>=,antsImage,ANY-method Man page
>=,antsImage,antsImage-method Man page
>=,antsImage,array-method Man page
>=,antsImage,list-method Man page
>=,array,antsImage-method Man page
ANTsR Man page
ANTsR-package Man page
Arith,antsImage,antsImage-method Man page
Arith,antsImage,array-method Man page
Arith,antsImage,list-method Man page
Arith,antsImage,logical-method Man page
Arith,antsImage,missing-method Man page
Arith,antsImage,numeric-method Man page
Arith,array,antsImage-method Man page
Arith,list,antsImage-method Man page
Arith,logical,antsImage-method Man page
Arith,numeric,antsImage-method Man page
DesikanKillianyTourville Man page
Math,antsImage-method Man page
Summary,antsImage-method Man page
[,ANY,antsImage,ANY,ANY-method Man page
[,antsImage,ANY,ANY,ANY-method Man page
[,antsImage,ANY,ANY-method Man page
[,antsImage,NULL,ANY,ANY-method Man page
[,antsImage,NULL,NULL,ANY-method Man page
[,antsImage,NULL,NULL-method Man page
[,antsImage,NULL,numeric,ANY-method Man page
[,antsImage,NULL,numeric-method Man page
[,antsImage,antsImage,ANY,ANY-method Man page
[,antsImage,logical,ANY,ANY-method Man page
[,antsImage,logical,ANY-method Man page
[,antsImage,missing,missing,ANY-method Man page
[,antsImage,missing,missing-method Man page
[,antsImage,missing,numeric,ANY-method Man page
[,antsImage,missing,numeric-method Man page
[,antsImage,numeric,NULL,ANY-method Man page
[,antsImage,numeric,NULL-method Man page
[,antsImage,numeric,missing,ANY-method Man page
[,antsImage,numeric,missing-method Man page
[,antsImage,numeric,numeric,ANY-method Man page
[,antsImage,numeric,numeric-method Man page
[<-,antsImage,NULL,ANY,ANY-method Man page
[<-,antsImage,NULL,NULL,numeric-method Man page
[<-,antsImage,NULL,antsRegion,ANY-method Man page
[<-,antsImage,NULL,antsRegion-method Man page
[<-,antsImage,NULL,numeric,numeric-method Man page
[<-,antsImage,NULL-method Man page
[<-,antsImage,antsImage,ANY,ANY-method Man page
[<-,antsImage,antsImage-method Man page
[<-,antsImage,array,ANY,ANY-method Man page
[<-,antsImage,array,antsRegion,ANY-method Man page
[<-,antsImage,array,antsRegion-method Man page
[<-,antsImage,array-method Man page
[<-,antsImage,list,ANY,ANY-method Man page
[<-,antsImage,list-method Man page
[<-,antsImage,logical,ANY,ANY-method Man page
[<-,antsImage,logical,antsRegion,ANY-method Man page
[<-,antsImage,logical,antsRegion-method Man page
[<-,antsImage,logical-method Man page
[<-,antsImage,matrix,ANY,ANY-method Man page
[<-,antsImage,matrix,antsRegion,ANY-method Man page
[<-,antsImage,matrix,antsRegion-method Man page
[<-,antsImage,matrix-method Man page
[<-,antsImage,missing,numeric,array-method Man page
[<-,antsImage,numeric,NULL,numeric-method Man page
[<-,antsImage,numeric,missing,array-method Man page
[<-,antsImage,numeric,numeric,numeric-method Man page
^,antsImage,antsImage-method Man page
^,antsImage,numeric-method Man page
^,numeric,antsImage-method Man page
aal Man page
abpBrainExtraction Man page Source code
abpN4 Man page Source code
abs,antsImage-method Man page
acos,antsImage-method Man page
acosh,antsImage-method Man page
addNoiseToImage Man page Source code
adjusted_rvcoef Man page Source code
affineInitializer Man page Source code
alffmap Man page Source code
all Man page
ants.set.seed Man page Source code
antsApplyTransforms Man page Source code
antsApplyTransformsToPoints Man page Source code
antsAverageImages Man page Source code
antsBOLDNetworkAnalysis Man page Source code
antsCompileFlags Man page Source code
antsCopyImageInfo Man page Source code
antsCopyImageInfo2 Man page Source code
antsDir Man page Source code
antsGetDirection Man page Source code
antsGetOrigin Man page Source code
antsGetSpacing Man page Source code
antsImage-class Man page
antsImage-math Man page
antsImage-operators Man page
antsImage-summary Man page
antsImageClone Man page Source code
antsImageGetSet Man page
antsImageHeaderInfo Man page Source code
antsImageIterator Man page Source code
antsImageIterator-class Man page
antsImageIteratorGet Man page Source code
antsImageIteratorGetIndex Man page Source code
antsImageIteratorGoToBegin Man page Source code
antsImageIteratorGoToReverseBegin Man page Source code
antsImageIteratorIsAtEnd Man page Source code
antsImageIteratorIsAtReverseEnd Man page Source code
antsImageIteratorNext Man page Source code
antsImageIteratorPrevious Man page Source code
antsImageIteratorRemaining Man page Source code
antsImageIteratorSet Man page Source code
antsImageIteratorSetIndex Man page Source code
antsImageMutualInformation Man page Source code
antsImagePhysicalSpaceConsistency Man page Source code
antsImageRead Man page Source code
antsImageStats Source code
antsImageTypeCast Man page Source code
antsImageWrite Man page Source code
antsIncludes Man page Source code
antsLibs Man page Source code
antsMatrix-class Man page
antsMotionCalculation Man page Source code
antsMotionCorr Man page Source code
antsRegion-class Man page
antsRegistration Man page Source code
antsSetDirection Man page Source code
antsSetOrigin Man page Source code
antsSetPixels Man page Source code
antsSetSpacing Man page Source code
antsSpatialICAfMRI Man page Source code
antsTransformIndexToPhysicalPoint Man page Source code
antsTransformPhysicalPointToIndex Man page Source code
antsVersions Man page
antspymm_nuisance_names Man page Source code
antspymm_predictors Man page Source code
antspymm_qc_names Man page Source code
antspymm_simlr Man page Source code
antspymm_simlr_update_residuals Man page Source code
antspymm_vartype Man page Source code
antsrGetPointerName Man page Source code
antsrMetric-class Man page
antsrMetricCreate Man page Source code
antsrMetricGetDerivative Man page Source code
antsrMetricGetValue Man page Source code
antsrMetricInitialize Man page Source code
antsrMetricSetFixedImage Man page Source code
antsrMetricSetFixedImageMask Man page Source code
antsrMetricSetFixedTransform Man page Source code
antsrMetricSetMovingImage Man page Source code
antsrMetricSetMovingImageMask Man page Source code
antsrMetricSetMovingTransform Man page Source code
antsrMetricSetNumberOfHistogramBins Man page Source code
antsrMetricSetRadius Man page Source code
antsrMetricSetSampling Man page Source code
antsrMotionCalculation Man page Source code
antsrSurf Man page Source code
antsrTransform-class Man page
antsrTransformFromDisplacementField Man page Source code
antsrVersions Man page
antsrVol Man page Source code
antsrimpute Man page Source code
any Man page
anyNA,antsImage-method Man page
apply Man page Source code
apply.antsImage Man page Source code
apply.default Man page Source code
applyAntsrTransform Man page Source code
applyAntsrTransformToImage Man page Source code
applyAntsrTransformToPoint Man page Source code
applyAntsrTransformToVector Man page Source code
apply_simlr_matrices Man page Source code
apply_simlr_matrices_dtfix Man page Source code
as.antsImage Man page
as.antsImage,array-method Man page
as.antsImage,matrix-method Man page
as.antsMatrix Man page
as.antsMatrix,data.frame-method Man page
as.antsMatrix,list-method Man page
as.antsMatrix,matrix-method Man page
as.array Man page
as.array,antsImage-method Man page
as.array.antsImage Man page Source code
as.character.antsImage Man page Source code
as.data.frame,antsMatrix-method Man page
as.data.frame.antsMatrix Man page Source code
as.factor.antsImage Man page Source code
as.list,antsMatrix-method Man page
as.matrix,antsImage-method Man page
as.matrix,antsMatrix-method Man page
as.matrix.antsImage Man page Source code
as.numeric,antsImage-method Man page
asin,antsImage-method Man page
asinh,antsImage-method Man page
aslAveraging Man page Source code
aslCensoring Man page Source code
aslDenoiseR Man page Source code
aslPerfusion Man page Source code
atan,antsImage-method Man page
atanh,antsImage-method Man page
atropos Man page Source code
ba_svd Man page Source code
basicInPaint Man page Source code
bayesianCBF Man page Source code
bayesianlm Man page Source code
bigLMStats Man page Source code
blockStimulus Man page Source code
bloodPerfusionSVD Man page Source code
bold_correlation_matrix Man page
boxplot.antsImage Man page Source code
buildTemplate Man page Source code
ceiling,antsImage-method Man page
check_ants Man page
check_ants,ANY-method Man page
check_ants,antsImage-method Man page
check_ants,character-method Man page
check_ants,list-method Man page
check_ants-methods Man page
check_components Source code
check_numeric_components Source code
clusterTimeSeries Man page Source code
coerce_mask Man page Source code
combineNuisancePredictors Man page Source code
compcor Man page Source code
components Man page
components,antsImage-method Man page
components<- Man page
components<-,antsImage-method Man page
composeAntsrTransforms Man page Source code
composeDisplacementFields Man page Source code
composeTransformsToField Man page Source code
computeDVARS Man page Source code
computeDVARSspatialMap Man page Source code
convolveImage Man page Source code
corw Man page Source code
cos,antsImage-method Man page
cosh,antsImage-method Man page
cospi,antsImage-method Man page
createAntsrTransform Man page Source code
createJacobianDeterminantImage Man page Source code
createWarpedGrid Man page Source code
cropImage Man page Source code
cropIndices Man page Source code
crossvalidatedR2 Man page Source code
cut.antsImage Man page Source code
cvEigenanatomy Man page Source code
deconvolutionSVD Man page Source code
decropImage Man page Source code
denoiseImage Man page Source code
density.antsImage Man page Source code
dim,antsImage-method Man page
direction Man page
direction,antsImage-method Man page
direction<- Man page
direction<-,antsImage-method Man page
displacementFieldFromAntsrTransform Man page Source code
divide_by_column_sum Man page Source code
eanatDef Man page Source code
eanatSelect Man page Source code
eigSeg Man page Source code
error_not_antsImage Man page Source code
estSmooth Man page Source code
euler Man page Source code
exemplarInpainting Man page Source code
exp,antsImage-method Man page
exploratory_visualization Man page Source code
extractSlice Man page Source code
fMRINormalization Man page Source code
factor.antsImage Man page Source code
fastMarchingExtension Man page Source code
filterfMRIforNetworkAnalysis Man page Source code
fitBsplineDisplacementField Man page Source code
fitBsplineObjectToScatteredData Man page Source code
fitThinPlateSplineDisplacementField Man page Source code
fitTimeVaryingTransformToPointSets Man page Source code
fitTransformToPairedPoints Man page Source code
floor,antsImage-method Man page
frequencyFilterfMRI Man page Source code
fsl2antsrTransform Man page Source code
functionalLungSegmentation Man page Source code
fuzzySpatialCMeansSegmentation Man page Source code
gamma,antsImage-method Man page
generateAifMaskImage Man page Source code
geoSeg Man page Source code
getANTsRData Man page Source code
getASLNoisePredictors Man page Source code
getAntsrTransformFixedParameters Man page Source code
getAntsrTransformParameters Man page Source code
getAverageOfTimeSeries Man page Source code
getCenterOfMass Man page Source code
getCentroids Man page Source code
getMask Man page Source code
getMultiResFeatureMatrix Man page Source code
getMultivariateTemplateCoordinates Man page Source code
getNeighborhoodAtVoxel Man page Source code
getNeighborhoodInMask Man page Source code
getPixels Man page Source code
getTemplateCoordinates Man page Source code
getfMRInuisanceVariables Man page Source code
glm_impute Man page Source code
gradient_invariant_orthogonality_defect Man page Source code
gradient_invariant_orthogonality_salad Man page Source code
hausdorffDistance Man page Source code
hemodynamicRF Man page Source code
hessianObjectness Man page Source code
hist.antsImage Man page Source code
histogramEqualizeImage Man page Source code
histogramMatchImage Man page Source code
histogramMatchImage2 Man page Source code
iBind Man page Source code
iMath Man page Source code
iMathOps Man page
icawhiten Man page Source code
ilr Man page Source code
ilr.predict Man page Source code
image2ClusterImages Man page Source code
imageDomainToSpatialMatrix Man page Source code
imageFileNames2ImageList Man page Source code
imageListToMatrix Man page Source code
imageSimilarity Man page Source code
imagesToMatrix Man page Source code
indicator_opt_both_ways Man page Source code
initialize,antsImage-method Man page
initialize,antsImageIterator-method Man page
initialize,antsMatrix-method Man page
initialize,antsrMetric-method Man page
initialize,antsrTransform-method Man page
initializeEigenanatomy Man page Source code
initializeSimlr Man page Source code
integrateVectorField Man page Source code
integrateVelocityField Man page Source code
interleaveMatrixWithItself Man page Source code
interpret_simlr_vector Man page Source code
interpret_simlr_vector2 Man page Source code
invariant_orthogonality_defect Man page Source code
invertAntsrTransform Man page Source code
invertDisplacementField Man page Source code
is.antsImage Man page Source code
is.finite,antsImage-method Man page
is.infinite,antsImage-method Man page
is.na,antsImage-method Man page
is.nan,antsImage-method Man page
jlfProp Man page Source code
joinEigenanatomy Man page Source code
jointLabelFusion Man page Source code
jointSmoothMatrixReconstruction Man page Source code
kellyKapowski Man page Source code
kmeansSegmentation Man page Source code
knnSmoothImage Man page Source code
knnSmoothingMatrix Man page Source code
labelClusters Man page Source code
labelGeometryMeasures Man page Source code
labelImageCentroids Man page Source code
labelImageRegistration Man page Source code
labelOverlapMeasures Man page Source code
labelStats Man page Source code
labels2matrix Man page Source code
lappend Man page Source code
lgamma,antsImage-method Man page
load.ANTsR Man page Source code
localGyrificationIndex Man page Source code
localJointLabelFusion Man page Source code
log,antsImage-method Man page
log10,antsImage-method Man page
log2,antsImage-method Man page
lowrankRowMatrix Man page Source code
make3ViewPNG Man page Source code
makeGraph Man page Source code
makeImage Man page Source code
makePointsImage Man page Source code
makePowersPointsImage Man page Source code
maskImage Man page Source code
mask_values Man page Source code
matrix2timeseries Man page Source code
matrixToImages Man page Source code
max Man page
max,antsImage-method Man page
mean.antsImage Man page Source code
median.antsImage Man page Source code
mergeChannels Man page Source code
mergeListToNDImage Man page Source code
mild Man page Source code
milr Man page Source code
milr.predict Man page Source code
min Man page
min,antsImage-method Man page
mni2tal Man page Source code
morphology Man page Source code
mrvnrfs Man page Source code
mrvnrfs.predict Man page Source code
multiLabelMorphology Man page Source code
multiResRandomForestRegression Man page Source code
multichannelPCA Man page Source code
multichannelToVector Man page Source code
multiscaleSVD Man page Source code
multiview_pca Man page Source code
n3BiasFieldCorrection Man page Source code
n3BiasFieldCorrection2 Man page Source code
n4BiasFieldCorrection Man page Source code
networkEiganat Man page Source code
optimize_indicator_matrix Man page Source code
origin Man page
origin,antsImage-method Man page
origin<- Man page
origin<-,antsImage-method Man page
orthogonalizeAndQSparsify Man page Source code
orthogonalizeAndQSparsifyOld Man page Source code
pairwiseImageDistanceMatrix Man page Source code
pairwise_matrix_similarity Man page Source code
partialVolumeCorrection Man page Source code
perfusionregression Man page Source code
petSUVR Man page Source code
pixeltype Man page
pixeltype,antsImage-method Man page
pixeltype<- Man page
pixeltype<-,antsImage-method Man page
plot.antsImage Man page Source code
plotBasicNetwork Man page Source code
plotPrettyGraph Man page Source code
plot_features Man page Source code
powers_areal_mni_itk Man page
predictSimlr Man page Source code
preprocessRestingBOLD Man page Source code
preprocessfMRI Man page Source code
priorBasedSegmentation Man page Source code
prod Man page
quantifyCBF Man page Source code
quantifySNPs Man page Source code
quantile.antsImage Man page Source code
randcca Man page Source code
randomMask Man page Source code
randsvd Man page Source code
randwhiten Man page Source code
range Man page
rankBasedMatrixSegmentation Man page Source code
rankIntensity Man page Source code
rapidlyInspectImageData Man page Source code
readAntsrTransform Man page Source code
readNormalizedPopulationData Man page Source code
read_simlr_data_frames Man page Source code
reflectImage Man page Source code
reflectionMatrix Man page Source code
regressProjections Man page Source code
regularizeSimlr Man page Source code
reho Man page Source code
renormalizeProbabilityImages Man page Source code
reorientImage Man page Source code
rep_number Source code
resampleImage Man page Source code
resampleImageToTarget Man page Source code
resels Man page Source code
rfSegmentation Man page Source code
rfSegmentationPredict Man page Source code
rftPval Man page Source code
rftResults Man page Source code
ri Man page Source code
ripmmarc Source code
ripmmarcBasisImage Source code
ripmmarcPop Source code
robustMatrixTransform Man page Source code
round,antsImage-method Man page
rsfDenoise Man page Source code
rvcoef Man page Source code
save.ANTsR Man page Source code
scaleSpaceFeatureDetection Source code
sd Man page Source code
sd.antsImage Man page Source code
sd.default Man page Source code
segmentShapeFromImage Man page Source code
segmentationRefinement.predict Man page Source code
segmentationRefinement.train Man page Source code
setAntsrTransformFixedParameters Man page Source code
setAntsrTransformParameters Man page Source code
shorten_pymm_names Man page Source code
show,antsImage-method Man page
show,antsImageIterator-method Man page
show,antsrMetric-method Man page
show,antsrTransform-method Man page
sign,antsImage-method Man page
simlr Man page Source code
simlr.parameters Man page Source code
simlr.perm Man page Source code
simlr.search Man page Source code
simlrU Man page Source code
simlr_feature_orth Man page Source code
simlr_impute Man page Source code
simlr_path_models Man page Source code
simulateDisplacementField Man page Source code
sin,antsImage-method Man page
sinh,antsImage-method Man page
sinpi,antsImage-method Man page
skeletonize Man page Source code
smoothAppGradCCA Man page Source code
smoothImage Man page Source code
smoothMatrixPrediction Man page Source code
smoothMultiRegression Man page Source code
smoothRegression Man page Source code
spacing Man page
spacing,antsImage-method Man page
spacing<- Man page
spacing<-,antsImage-method Man page
sparseDecom Man page Source code
sparseDecom2 Man page Source code
sparseDecom2boot Man page Source code
sparseDecomboot Man page Source code
sparseDistanceMatrix Man page Source code
sparseDistanceMatrixXY Man page Source code
sparseRegression Man page Source code
spatialbayesianlm Man page Source code
splitChannels Man page Source code
splitData Man page Source code
splitMask Man page Source code
splitNDImageToList Man page Source code
sqrt,antsImage-method Man page
statFieldThresh Man page Source code
subgradientL1Regression Man page Source code
subjectDataToGroupDataFrame Man page Source code
subset.antsImage Man page Source code
sum Man page
sum_preserving_matrix_partition Man page Source code
take_abs_unsigned Man page Source code
tan,antsImage-method Man page
tanh,antsImage-method Man page
tanpi,antsImage-method Man page
taskFMRI Man page Source code
temporalwhiten Man page Source code
testEanat Man page Source code
thresholdImage Man page Source code
timeseries2matrix Man page Source code
timeseriesN3 Man page Source code
timeserieswindow2matrix Man page Source code
tracts Man page
trapz Man page Source code
trunc,antsImage-method Man page
unique.antsImage Man page Source code
usePkg Man page Source code
var Man page Source code
var.antsImage Man page Source code
var.default Man page Source code
vectorToMultichannel Man page Source code
vector_to_df Man page Source code
visualize_lowrank_relationships Man page Source code
visualize_permutation_test Man page Source code
vwnrfs Man page Source code
vwnrfs.predict Man page Source code
weingartenImageCurvature Man page Source code
which.antsImage Source code
whiten Man page Source code
whiten_matrix Man page Source code
writeAntsrTransform Man page Source code
writeNormalizedPopulationData Man page Source code
write_simlr_data_frames Man page Source code
stnava/ANTsR documentation built on April 13, 2025, 4:10 a.m.

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