Files in theMILOlab/SPATA2
A Toolbox for Spatial Expression Analysis

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/.gitignore

R/S4-generic-functions.R

R/a.R R/add.R R/adj-aZ.R R/autoencoder.R R/b.R R/c.R R/check.R R/concept-documentation.R R/contains.R R/create.R R/createSpatialSegmentation.R R/d.R R/data.R R/deprecated_a-i.R R/deprecated_j-z.R R/dev.R R/discuss.R R/documentation-dummies.R R/downgrade.R R/e.R R/f.R R/g.R R/getA-G.R R/getH-M.R R/getN-Z.R R/h.R R/html.R R/i.R R/imported-functions.R R/initiateSpataObject.R R/j.R R/l.R R/m.R R/n.R R/new.R R/o.R R/p.R R/package-dependencies.R R/plotA-E.R R/plotF-G.R R/plotH-M.R R/plotN-S.R R/plotSurface.R R/plotT-Z.R R/plot_.R R/python-wrappers.R R/r-objects.R R/r.R R/runA-Z.R R/s.R R/setA-Z.R R/shinyModules.R R/t.R R/u.R R/unused.R R/v.R R/w.R README.md

SPATA2.Rproj

analysis/Kueckelhaus_et_al_2023/object_creation.R analysis/Kuppe_et_al_2022/folder_processing.R analysis/Kuppe_et_al_2022/spata2_object_creation.R

data/cnv_ref.rda

data/cnv_regions_df.rda

data/coverage_model.rda

data/example_data.rda

data/gene_pos_df.rda

data/image_annotations.rda

data/signatures.rda

data/spatial_annotations.rda

data/visium_spots.rda

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