Files in xiayh17/RNAseqStat2

A Pipeline to Process RNAseq Data

R/CreateDEGContainer.R R/MSigDBSummary.R R/Visualization_DEG.R R/Visualization_DEGvolcano.R R/Visualization_check.R R/Visualization_enrichBar.R R/Visualization_enrichCirclize.R R/Visualization_gse.R R/allClass.R R/allGeneric.R R/allMethods.R R/createOB.R R/createParam.R R/degGroup.R R/degResolve.R R/degResolveArray.R R/degSummary.R R/gseResolve.R R/gseSummary.R R/hyperResolve.R R/hyperSummary.R R/msigdbResolve.R R/runALL.R R/runCheck.R R/runDEG.R R/runGSEA.R R/runHyper.R R/runMSigDB.R R/utils-go.R R/utils-pipe.R R/utils.R README.md dev/Msigdb.R dev/TestWorkflowArray.R dev/Testworkflow.R dev/bingxing.R dev/ci.R dev/git.R dev/license.R dev/load.R dev/minimal_step.R dev/readme.R dev/test_GO.R dev/theme.R dev/usepackages.R man/Create_DEGContainer.Rd man/Create_MSigDB.Rd man/Create_dataInfo.Rd man/Create_gseParam.Rd man/Create_hyperParam.Rd man/Create_msigdbGSEAparam.Rd man/Create_msigdbHyperParam.Rd man/Create_msigdbParam.Rd man/Create_treatInfo.Rd man/DEGContainer.Rd man/DEGtopHeatmap.Rd man/DEGvenn.Rd man/DESeq2_resolve.Rd man/FC_Identify.Rd man/GSEAbar.Rd man/GSEAplot.Rd man/HKG_check.Rd man/MSigDB.Rd man/MSigDBSummary.Rd man/PointVolcano.Rd man/ac_.Rd man/box_check.Rd man/cleanSYMBOL.Rd man/commonGroup.Rd man/compareEnrichCircle.Rd man/cor500_check.Rd man/corall_check.Rd man/cutFC_Verify.Rd man/cutMuch.Rd man/dataDEG.Rd man/dataInfo.Rd man/degGroup.Rd man/degResolve.Rd man/degResolveArray.Rd man/degResults.Rd man/degSummary.Rd man/deg_here.Rd man/density_check.Rd man/edgeR_resolve.Rd man/eggnogG2T.Rd man/enrichBar.Rd man/enrichGO2.Rd man/exprBox.Rd man/exprCorHeatmap.Rd man/exprHKGheatmap.Rd man/exprPCA.Rd man/exprRidges.Rd man/exprTopHeatmap.Rd man/geom_volcano_point.Rd man/geom_volcano_text.Rd man/get_breaks.Rd man/groupCir.Rd man/gseGO2.Rd man/gseMSigDB.Rd man/gseResolve.Rd man/gseSummary.Rd man/gsvaResolve.Rd man/heatCir.Rd man/heatLegend.Rd man/highlightGroup.Rd man/hyperBar.Rd man/hyperMSigDB.Rd man/hyperMSigDB_Resolve.Rd man/hyperResolve.Rd man/hyperSummary.Rd man/hyper_GS.Rd man/idLegend.Rd man/limma_resolve.Rd man/limma_resolveArray.Rd man/linkCir.Rd man/modelEnrich.Rd man/msigdbGet.Rd man/newDEGContainer.Rd man/paletteCir.Rd man/pca_check.Rd man/pipe.Rd man/pvalue_Identify.Rd man/rectCir.Rd man/rectCirDiscrete.Rd man/runALL.Rd man/runCheck.Rd man/runDEG.Rd man/runGSEA.Rd man/runHyper.Rd man/runMSigDB.Rd man/textBarData.Rd man/theme_volcano.Rd man/toSYMBOL.Rd man/top1000_check.Rd man/topGene.Rd man/volcano_nudge_x_down.Rd man/volcano_nudge_x_up.Rd