Files in vegan

Community Ecology Package

inst/doc/FAQ-vegan.Rmd inst/doc/diversity-vegan.pdf inst/doc/partitioning.pdf inst/doc/intro-vegan.pdf inst/doc/intro-vegan.R inst/doc/decision-vegan.pdf inst/doc/decision-vegan.R inst/doc/diversity-vegan.R inst/doc/partitioning.R vignettes/FAQ-vegan.Rmd vignettes/varpart4.pdf vignettes/varpart23.pdf R/scores.orditkplot.R R/as.mlm.R R/screeplot.prcomp.R R/weights.decorana.R R/print.fisherfit.R R/print.monoMDS.R R/nestedtemp.R R/plot.spantree.R R/points.metaMDS.R R/plot.prestonfit.R R/rda.formula.R R/adipart.formula.R R/SSgitay.R R/update.nullmodel.R R/summary.meandist.R R/mrpp.R R/mantel.correlog.R R/print.nestedchecker.R R/rrarefy.R R/summary.prc.R R/decostand.R R/points.decorana.R R/ordiTerminfo.R R/procrustes.R R/as.ts.permat.R R/as.mlm.cca.R R/linestack.R R/as.mcmc.oecosimu.R R/ordispider.R R/vegandocs.R R/vegdist.R R/print.factorfit.R R/AIC.radfit.R R/panel.ordi.R R/metaMDSiter.R R/specpool.R R/veganCovEllipse.R R/metaMDSredist.R R/kendall.post.R R/kendall.global.R R/taxondive.R R/print.mso.R R/profile.MOStest.R R/no.shared.R R/scores.pcnm.R R/ordigrid.R R/treedist.R R/zzz.R R/plot.decorana.R R/scores.rda.R R/prestonfit.R R/MDSrotate.R R/anova.ccabyterm.R R/print.procrustes.R R/plot.permat.R R/coverscale.R R/weights.cca.R R/scores.ordihull.R R/points.humpfit.R R/envfit.formula.R R/lines.procrustes.R R/scalingUtils.R R/plot.renyiaccum.R R/make.cepnames.R R/SSarrhenius.R R/specslope.R R/betadisper.R R/estimateR.data.frame.R R/fitspecaccum.R R/getPermuteMatrix.R R/ordihull.R R/plot.radfit.frame.R R/monoMDS.R R/multipart.formula.R R/cca.R R/wcmdscale.R R/print.summary.meandist.R R/print.varpart.R R/coef.cca.R R/print.metaMDS.R R/scores.ordiplot.R R/summary.isomap.R R/text.decorana.R R/nullmodel.R R/cca.formula.R R/veiledspec.R R/summary.bioenv.R R/rad.zipfbrot.R R/biplot.CCorA.R R/ordiR2step.R R/vegan-deprecated.R R/predict.fitspecaccum.R R/distconnected.R R/simulate.nullmodel.R R/plot.taxondive.R R/predict.humpfit.R R/eigengrad.R R/hiersimu.R R/text.ordiplot.R R/as.preston.R R/print.nesteddisc.R R/scores.metaMDS.R R/as.ts.oecosimu.R R/inertcomp.R R/goodness.cca.R R/bstick.R R/permuted.index.R R/bstick.princomp.R R/print.isomap.R R/print.decorana.R R/biplot.rda.R R/varpart4.R R/ordisplom.R R/beals.R R/tolerance.cca.R R/text.metaMDS.R R/print.anosim.R R/renyi.R R/predict.decorana.R R/orditorp.R R/summary.anosim.R R/print.summary.cca.R R/RsquareAdj.R R/simpleRDA2.R R/lines.spantree.R R/summary.ordihull.R R/decorana.R R/plot.cca.R R/summary.procrustes.R R/ordilabel.R R/taxa2dist.R R/stressplot.R R/print.bioenv.R R/summary.radfit.frame.R R/print.nestednodf.R R/prestondistr.R R/print.prestonfit.R R/as.rad.R R/lines.radline.R R/ordistep.R R/plot.contribdiv.R R/estimateR.matrix.R R/panel.ordi3d.R R/eventstar.R R/goodness.metaMDS.R R/print.wcmdscale.R R/rareslope.R R/pasteCall.R R/screeplot.princomp.R R/ordiArrowTextXY.R R/postMDS.R R/plot.radfit.R R/TukeyHSD.betadisper.R R/plot.ordisurf.R R/pregraphKM.R R/nestednodf.R R/orderingKM.R R/print.permutest.cca.R R/persp.tsallisaccum.R R/ordicloud.R R/identify.ordiplot.R R/print.envfit.R R/residuals.cca.R R/estimateR.default.R R/points.ordiplot.R R/scores.default.R R/treedive.R R/calibrate.cca.R R/bstick.cca.R R/protest.R R/hiersimu.default.R R/print.permutest.betadisper.R R/eigenvals.R R/print.permat.R R/fieller.MOStest.R R/CCorA.R R/meandist.R R/mso.R R/print.commsim.R R/checkSelect.R R/plot.cascadeKM.R R/stepacross.R R/model.frame.cca.R R/print.nestedn0.R R/goodness.R R/print.specaccum.R R/metaMDSdist.R R/ordiellipse.R R/scores.R R/ordimedian.R R/print.radfit.frame.R R/bstick.decorana.R R/labels.envfit.R R/scores.cca.R R/mantel.partial.R R/summary.cca.R R/specnumber.R R/plot.fisherfit.R R/lines.permat.R R/plot.anosim.R R/cophenetic.spantree.R R/print.MOStest.R R/print.radline.R R/points.procrustes.R R/rad.lognormal.R R/betadiver.R R/howHead.R R/as.mlm.rda.R R/plot.orditkplot.R R/print.poolaccum.R R/summary.ordiellipse.R R/specaccum.R R/multipart.R R/head.summary.cca.R R/plot.isomap.R R/tsallisaccum.R R/print.summary.isomap.R R/radfit.default.R R/ordicluster.R R/print.nestedtemp.R R/print.summary.taxondive.R R/lines.humpfit.R R/wascores.R R/initMDS.R R/vif.cca.R R/rda.R R/print.summary.decorana.R R/plot.envfit.R R/weights.rda.R R/adonis.R R/estimateR.R R/plot.poolaccum.R R/fitted.cca.R R/ordipointlabel.R R/indpower.R R/spantree.R R/deviance.cca.R R/vegan-defunct.R R/ordiareatest.R R/anova.ccalist.R R/extractAIC.cca.R R/print.summary.prc.R R/as.mcmc.permat.R R/summary.poolaccum.R R/plot.meandist.R R/msoplot.R R/plot.varpart.R R/points.orditkplot.R R/isomapdist.R R/summary.humpfit.R R/radlattice.R R/spandepth.R R/add1.cca.R R/plot.clamtest.R R/nestedbetasor.R R/plot.prc.R R/raupcrick.R R/calibrate.ordisurf.R R/ordiArrowMul.R R/print.radfit.R R/fisherfit.R R/plot.metaMDS.R R/dispweight.R R/print.betadisper.R R/pcnm.R R/str.nullmodel.R R/alias.cca.R R/print.adonis.R R/vectorfit.R R/permatfull.R R/text.orditkplot.R R/plot.betadisper.R R/dispindmorisita.R R/summary.permat.R R/permutest.betadisper.R R/rarecurve.R R/print.protest.R R/plot.rad.R R/print.mantel.R R/bioenv.default.R R/summary.taxondive.R R/nestedchecker.R R/rad.zipf.R R/ordisurf.R R/veganMahatrans.R R/boxplot.specaccum.R R/diversity.R R/summary.clamtest.R R/print.varpart234.R R/contribdiv.R R/print.nullmodel.R R/persp.renyiaccum.R R/isomap.R R/showvarparts.R R/prc.R R/hierParseFormula.R R/scores.decorana.R R/points.cca.R R/downweight.R R/profile.humpfit.R R/print.humpfit.R R/deviance.rda.R R/coef.rda.R R/boxplot.betadisper.R R/scores.envfit.R R/ordiresids.R R/simulate.rda.R R/rarefy.R R/anova.ccanull.R R/lines.prestonfit.R R/factorfit.R R/permustats.R R/scores.betadisper.R R/nesteddisc.R R/centroids.cca.R R/as.hclust.spantree.R R/cascadeKM.R R/ordixyplot.R R/bioenv.formula.R R/fitted.radfit.R R/summary.dispweight.R R/bgdispersal.R R/vegemite.R R/print.summary.bioenv.R R/estaccumR.R R/hiersimu.formula.R R/nestedn0.R R/ordiParseFormula.R R/scores.lda.R R/bstick.prcomp.R R/nobs.R R/plot.MOStest.R R/cca.default.R R/tolerance.R R/print.taxondive.R R/gdispweight.R R/ordiNAexclude.R R/ordiarrows.R R/calibrate.R R/plot.specaccum.R R/metaMDS.R R/envfit.default.R R/tabasco.R R/cIndexKM.R R/designdist.R R/predict.rda.R R/treeheight.R R/print.mantel.correlog.R R/bioenv.R R/humpfit.R R/ordiArgAbsorber.R R/read.cep.R R/varpart2.R R/intersetcor.R R/MOStest.R R/confint.MOStest.R R/screeplot.cca.R R/print.simmat.R R/make.commsim.R R/oecosimu.R R/predict.cca.R R/anova.prc.R R/specpool2vect.R R/orditkplot.R R/scores.betadiver.R R/print.summary.humpfit.R R/plot.humpfit.R R/adipart.R R/print.CCorA.R R/plot.radline.R R/SSlomolino.R R/print.mrpp.R R/renyiaccum.R R/spenvcor.R R/plot.renyi.R R/coef.radfit.R R/rad.preempt.R R/varpart.R R/multipart.default.R R/rad.null.R R/summary.decorana.R R/as.fisher.R R/predict.radline.R R/plot.preston.R R/swan.R R/plot.varpart234.R R/wisconsin.R R/print.summary.clamtest.R R/print.oecosimu.R R/radfit.data.frame.R R/ade2vegancca.R R/plot.mantel.correlog.R R/ordiGetData.R R/poolaccum.R R/radfit.R R/plot.nestedtemp.R R/anova.cca.R R/permatswap.R R/text.cca.R R/varpart3.R R/rda.default.R R/envfit.R R/plot.procrustes.R R/print.cca.R R/ordisegments.R R/adipart.default.R R/stressplot.wcmdscale.R R/summary.specaccum.R R/plot.ordipointlabel.R R/simper.R R/print.summary.permat.R R/print.vectorfit.R R/fitted.rda.R R/tsallis.R R/fitted.capscale.R R/fitted.procrustes.R R/prepanel.ordi3d.R R/ordiplot.R R/commsim.R R/capscale.R R/print.summary.procrustes.R R/screeplot.decorana.R R/print.capscale.R R/rankindex.R R/points.radline.R R/anosim.R R/plot.betadiver.R R/residuals.procrustes.R R/predict.specaccum.R R/SSgleason.R R/clamtest.R R/permutest.cca.R R/fisher.alpha.R R/bstick.default.R R/mantel.R R/anova.betadisper.R R/drop1.cca.R R/model.matrix.cca.R R/ordilattice.getEnvfit.R man/MOStest.Rd man/mantel.correlog.Rd man/vegemite.Rd man/mantel.Rd man/nestedtemp.Rd man/nullmodel.Rd man/kendall.global.Rd man/eventstar.Rd man/ordipointlabel.Rd man/bgdispersal.Rd man/adonis.Rd man/cca.object.Rd man/read.cep.Rd man/vegan-defunct.Rd man/permustats.Rd man/add1.cca.Rd man/specpool.Rd man/varpart.Rd man/commsim.Rd man/rankindex.Rd man/mite.Rd man/beals.Rd man/scores.Rd man/diversity.Rd man/stressplot.wcmdscale.Rd man/goodness.cca.Rd man/reorder.hclust.Rd man/multipart.Rd man/dune.taxon.Rd man/screeplot.cca.Rd man/humpfit.Rd man/bioenv.Rd man/indpower.Rd man/specaccum.Rd man/stepacross.Rd man/dune.Rd man/pyrifos.Rd man/wascores.Rd man/vegan-internal.Rd man/vegan-deprecated.Rd man/capscale.Rd man/ordiresids.Rd man/envfit.Rd man/ordilabel.Rd man/plot.cca.Rd man/contribdiv.Rd man/ordihull.Rd man/as.mlm.Rd man/vegandocs.Rd man/mrpp.Rd man/dispweight.Rd man/dispindmorisita.Rd man/simper.Rd man/tsallis.Rd man/ordisurf.Rd man/ordiArrowTextXY.Rd man/ordiplot.Rd man/rarefy.Rd man/model.matrix.cca.Rd man/decorana.Rd man/distconnected.Rd man/MDSrotate.Rd man/ordiarrows.Rd man/raupcrick.Rd man/varechem.Rd man/RsquareAdj.Rd man/BCI.Rd man/biplot.rda.Rd man/wcmdscale.Rd man/orditorp.Rd man/taxondive.Rd man/goodness.metaMDS.Rd man/make.cepnames.Rd man/orditkplot.Rd man/renyi.Rd man/deviance.cca.Rd man/ordistep.Rd man/SSarrhenius.Rd man/betadiver.Rd man/metaMDS.Rd man/cascadeKM.Rd man/permatfull.Rd man/simulate.rda.Rd man/designdist.Rd man/permutest.betadisper.Rd man/spantree.Rd man/radfit.Rd man/prc.Rd man/vegdist.Rd man/tolerance.Rd man/permutations.Rd man/eigenvals.Rd man/vegan-package.Rd man/anova.cca.Rd man/cca.Rd man/clamtest.Rd man/mso.Rd man/nobs.adonis.Rd man/predict.cca.Rd man/decostand.Rd man/procrustes.Rd man/treedive.Rd man/betadisper.Rd man/fisherfit.Rd man/oecosimu.Rd man/isomap.Rd man/sipoo.Rd man/ordixyplot.Rd man/pcnm.Rd man/CCorA.Rd man/anosim.Rd man/adipart.Rd man/monoMDS.Rd man/linestack.Rd