API for oneChannelGUI
A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
| Global functions | |
|---|---|
| .annotation | Man page |
| .myfindOverlaps | Man page |
| .myrk | Man page |
| AboutaffylmGUI | Man page |
| AboutextendedaffylmGUI | Man page |
| AptMidas | Man page |
| ComputeContrasts | Man page Source code |
| ComputeLinearModelFit | Man page Source code |
| DESeqInterface | Man page |
| EDANtFreq | Man page |
| EDAbetweenLane | Man page |
| EDAbiasPlot | Man page |
| EDAboxplot | Man page |
| EDAplotQuality | Man page |
| EDAreadNumber | Man page |
| EDAwithinLane | Man page |
| EG2probeset | Man page |
| ExportNormalizedExpressionValues | Man page Source code |
| ExportNormalizedExpressionValues1 | Man page Source code |
| ExportfeatureNames | Man page Source code |
| GOenrichment | Man page |
| GOstatsHelp | Man page Source code |
| GetNormalizationMethod | Man page Source code |
| IPAlistFilter | Man page |
| ML.edesign | Man page |
| NGSreformat | Man page |
| NewLimmaFile | Man page Source code |
| NewLimmaFileNGS | Man page Source code |
| NormalizeNow | Man page Source code |
| OpenAFile | Man page Source code Source code Source code |
| OpenAGeoFile | Man page Source code |
| OpenALimmaFile | Man page Source code |
| OpenBeadStudioFiles | Man page |
| OpenCDFandTargetsfiles | Man page Source code |
| OpenExonFile | Man page Source code |
| OpenExonProbeFile | Man page Source code |
| OpenExonandTargetsfiles | Man page Source code |
| OpenGeoFile | Man page Source code |
| OpenGeoFiles | Man page |
| OpenLargeFile | Man page Source code |
| OpenLargefiles | Man page |
| OpenLimmaFile | Man page Source code |
| OpenNgsfiles | Man page |
| OpenmRNABam | Man page |
| OpenmiRBam | Man page |
| OpenmiRExpress | Man page |
| OpenmiRProfiles | Man page |
| OpenmiRShrimp | Man page |
| OpenmiRanalyserfiles | Man page |
| PlotOptionsv1 | Man page Source code |
| RankProdHelp | Man page Source code |
| Reads2logos | Man page |
| RmiRInterface | Man page |
| SaveAsLimmaFile | Man page Source code |
| SaveDESeq2TopTable | Source code |
| SaveLimmaFile | Man page Source code |
| SaveMirPathTopTable | Source code |
| SaveNGS1TopTable | Source code |
| SaveNGS2TopTable | Source code |
| SaveNGSGO | Source code |
| SaveNGSTopTable | Source code |
| SetED | Man page Source code |
| VennDiagram | Man page Source code |
| adaptorTrimm | Man page |
| addAnnLib | Man page |
| addga | Man page Source code |
| affyPLMHelp | Man page Source code |
| affyPlotMA | Man page Source code |
| annotateNGSeset | Man page Source code |
| aptFolder | Man page |
| bayseqInterface | Man page |
| biomartFilter | Man page |
| bofa | Man page |
| bowtieBuilt | Man page |
| bowtieDownload | Man page |
| bowtieGenomes | Man page |
| buildingLocalAnnotation | Man page |
| cdsDiff | Man page Source code |
| changeMenu | Man page |
| changes | Man page |
| chimeraseq | Man page Source code |
| chooseEDir | Man page Source code |
| chooseInDir | Man page Source code |
| chooseOutDir | Man page Source code |
| chrLength | Man page |
| closePdf | Man page Source code |
| colExtract | Man page |
| combineGeoMSF | Man page |
| combining2eSet | Man page |
| consistentFilters | Man page |
| cosie | Source code |
| cosieWrapper | Man page Source code |
| countMature | Source code |
| createDir | Man page Source code |
| createGeoTarget | Man page |
| crosshybFilter | Man page Source code |
| ctrtrtHeatmap | Man page |
| cuffdiff | Man page Source code |
| cufflinks | Man page Source code |
| cuffmerge | Man page Source code |
| dabgFilter | Man page |
| delete.ML | Man page |
| deleteLocalData | Man page |
| delta.plot1 | Source code |
| desCounts | Man page Source code |
| desGenes | Man page Source code |
| deseq2Processing | Man page Source code |
| dexCounts | Man page Source code |
| dexExons | Man page Source code |
| dfMAplot | Man page |
| downloadMirbase | Source code |
| downloadShrimp | Man page Source code |
| eSet4meV | Man page |
| edgeRNorm | Man page |
| edgerInterface | Man page |
| enrich | Man page Source code |
| erankProdAltSpl | Man page |
| erankProdAltSplFilter | Man page Source code |
| exonContrasts | Man page |
| exonScaffold | Man page |
| exonTopTableExtract | Man page |
| exonsSpecific2as | Man page |
| exportFASTA | Man page |
| extPckInfo | Man page |
| extractAffyids | Man page |
| extractmirTargets | Man page |
| fastQC | Man page |
| filteringTable | Man page |
| filteringmiRtargets | Man page |
| fromNGStoDf | Source code |
| fusionNS | Man page Source code |
| fusionfilter | Man page Source code |
| fusionpeptides | Man page Source code |
| geneDiff | Man page Source code |
| geneExonLibs | Man page |
| genefilterHelp | Man page Source code |
| genomePlot | Man page |
| genomeStudioReformat | Man page Source code |
| geoVSbioc | Man page |
| getNGSannotation | Man page |
| gettingEG | Source code |
| gettingOneEG | Source code |
| goseqInterface | Man page |
| hsfa | Man page |
| importfusions | Man page Source code |
| initialize.extAffylmGUI | Man page |
| inspecting.one.splice.index | Man page |
| inspecting.splice.index | Man page |
| intensityFilter | Man page |
| intronicBg | Man page |
| iqrFilter | Man page |
| isoDiff | Man page Source code |
| javaFolder | Man page |
| largedatasetNorm | Man page |
| length.stat | Source code |
| libraryFilesDir | Man page |
| limma2paired | Man page |
| limmaExons | Man page |
| listFilter | Man page |
| loadmirnapath | Man page Source code |
| log2Conversion | Man page |
| mRNAbowtieRun | Man page |
| mRNAmiRCor | Man page |
| maSigProHelp | Man page Source code |
| makeBED15 | Man page |
| makeDb.R | Source code |
| makeGCcontent | Man page |
| makeGeneScaffold | Man page |
| makeSam | Man page Source code |
| maligReads | Source code |
| mapPSR | Source code |
| mapping2RefSeq | Man page |
| mapping2ensembl | Man page |
| mapping2exon | Man page |
| mappingPSR | Source code |
| masigpro | Man page |
| masigpro.edesign | Man page |
| masigpro.view | Man page |
| matureOnHairpin | Source code |
| meVDownload | Man page |
| metaArrayIC | Man page Source code |
| metaArrayMerge | Man page Source code |
| miRNAbowtieRun | Man page |
| miRNAde | Man page Source code |
| midasFilter | Man page |
| mirPath | Man page Source code |
| mirnaTable | Man page Source code |
| mmfa | Man page |
| myExpresso | Man page |
| myfindOverlaps | Source code Source code |
| myrk | Source code |
| ncHs.data | Man page |
| ncMm.data | Man page |
| ncRn.data | Man page |
| ncScaffold | Man page |
| ngsperlDownload | Man page |
| normBoxplot | Man page |
| nternalLoop | Source code |
| ocPlotHist | Man page |
| ocPlotPCA | Man page |
| onAttach | Source code |
| oneChannelGUI | Man page |
| oneChannelGUI-package | Man page |
| oneChannelGUI.start | Man page |
| oneChannelGUIHelp | Man page Man page Source code |
| openPdf | Man page Source code |
| openmiRNAFile | Source code |
| pamr.confusion.mod | Source code |
| pamrHelp | Man page Source code |
| pdmclassHelp | Man page Source code |
| peaksDetector | Source code |
| perm.pamr | Source code |
| perm.pdmclass | Source code |
| permuting | Man page Source code |
| plierToZero | Man page |
| plotDE.exons | Man page Source code |
| plotDensity | Source code |
| plotGO | Man page Source code |
| plotVariantSI | Man page |
| plotcoverage | Man page Source code |
| preProcessingNGS | Source code |
| qcMDS | Man page |
| rankProd | Man page |
| rankingConversion | Man page |
| rawBoxplotPN | Man page |
| rawpCheck | Man page |
| reading.log | Source code |
| recoverUnfiltered | Man page |
| refiningPeaks | Man page |
| reformatGdl | Man page |
| refseqDownload | Man page |
| resize | Source code |
| retrieveMirTargets | Man page |
| retrievePSRseq | Man page |
| retrievePSRseq1gid | Man page |
| reviqrFilter | Man page |
| rnfa | Man page |
| runEnrichment | Man page Source code |
| runningJetta | Man page Source code |
| sample.size.evaluation | Man page |
| sample.size.evaluation1 | Man page |
| saveFiltered | Source code |
| setBinDir | Man page Source code |
| showDataset | Man page |
| showTopTable | Man page Source code |
| shrimp | Source code |
| siggenes | Man page |
| siggenesHelp | Man page Source code |
| simFilter | Man page Source code |
| sizepowerHelp | Man page Source code |
| spliceIndex | Man page |
| ssizeHelp | Man page Source code |
| standAloneAddingAnnotation | Man page |
| standAloneBuildingLocalAnnotation | Man page |
| startmeV | Man page |
| targetWidget | Man page |
| templA | Man page Source code |
| topTable.exons | Man page Source code |
| topTable.genes | Man page Source code |
| tophat | Man page Source code |
| tophatrun | Man page Source code |
| trainTest | Man page |
| trim | Source code |
| tuxedoMenu | Man page Source code |
| tuxedoSetup | Man page Source code |
| unionReads | Source code |
| updateLibs | Man page |
| variantExons | Man page |
| variantSI | Man page |
| whichKindOfArray | Man page |
| wrapNGS | Man page |
| wrapScaffold | Man page |
| wrapperMirnaCounts | Man page Source code |
