Files in oneChannelGUI
A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
NEWS
DESCRIPTION
NAMESPACE
man/OpenBeadStudioFiles.rd
man/spliceIndex.Rd
man/combineGeoMSF.Rd
man/getNGSannotation.Rd
man/variantSI.Rd
man/mapping2RefSeq.Rd
man/ML.edesign.Rd
man/masigpro.Rd
man/makeGCcontent.Rd
man/miRNAbowtieRun.Rd
man/VennDiagram.Rd
man/bowtieDownload.Rd
man/IPAlistFilter.Rd
man/mmfa.Rd
man/rawBoxplotPN.Rd
man/refseqDownload.Rd
man/hsfa.Rd
man/trainTest.Rd
man/plotGO.Rd
man/EDAreadNumber.Rd
man/inspecting.one.splice.index.Rd
man/plotVariantSI.Rd
man/masigpro.edesign.Rd
man/limma2paired.Rd
man/refiningPeaks.Rd
man/edgeRNorm.Rd
man/exonContrasts.Rd
man/dexCounts.Rd
man/simFilter.Rd
man/bowtieGenomes.Rd
man/qcMDS.Rd
man/rankProd.Rd
man/dfMAplot.Rd
man/rankingConversion.Rd
man/ncRn.data.Rd
man/filteringmiRtargets.Rd
man/desGenes.Rd
man/cosieWrapper.Rd
man/RmiRInterface.Rd
man/rnfa.Rd
man/oneChannelGUI.Rd
man/extractAffyids.Rd
man/topTable.exons.Rd
man/adaptorTrimm.Rd
man/bowtieBuilt.Rd
man/exonsSpecific2as.Rd
man/chrLength.Rd
man/mRNAmiRCor.Rd
man/createGeoTarget.Rd
man/listFilter.Rd
man/combining2eSet.Rd
man/targetWidget.Rd
man/limmaExons.Rd
man/reviqrFilter.Rd
man/ctrtrtHeatmap.Rd
man/colExtract.Rd
man/intensityFilter.Rd
man/standAloneBuildingLocalAnnotation.Rd
man/AptMidas.Rd
man/geneExonLibs.Rd
man/metaArrayIC.Rd
man/wrapScaffold.Rd
man/mapping2exon.Rd
man/variantExons.Rd
man/edgerInterface.Rd
man/extractmirTargets.Rd
man/EG2probeset.Rd
man/standAloneAddingAnnotation.Rd
man/ncHs.data.Rd
man/wrapNGS.Rd
man/genomeStudioReformat.Rd
man/annotateNGSeset.Rd
man/metaArrayMerge.rd
man/makeSam.Rd
man/exonScaffold.Rd
man/retrievePSRseq1gid.Rd
man/showTopTable.Rd
man/PlotOptionsv1.Rd
man/plierToZero.Rd
man/ocPlotPCA.Rd
man/myExpresso.Rd
man/OpenLargefiles.Rd
man/mapping2ensembl.Rd
man/rawpCheck.Rd
man/GOenrichment.Rd
man/mRNAbowtieRun.Rd
man/oneChannelGUI-package.Rd
man/siggenes.Rd
man/updateLibs.Rd
man/tuxedoSetup.Rd
man/bofa.Rd
man/consistentFilters.Rd
man/geoVSbioc.Rd
man/iqrFilter.Rd
man/EDAplotQuality.Rd
man/bayseqInterface.Rd
man/ncMm.data.Rd
man/showDataset.Rd
man/sample.size.evaluation.Rd
man/makeBED15.Rd
man/erankProdAltSplFilterl.Rd
man/exonTopTableExtract.Rd
man/NGSreformat.Rd
man/biomartFilter.Rd
man/dexExons.Rd
man/masigpro.view.Rd
man/crosshybFilter.Rd
man/templA.Rd
man/filteringTable.Rd
man/eSet4meV.Rd
man/ocPlotHist.Rd
man/EDANtFreq.Rd
man/erankProdAltSpl.Rd
man/OpenmRNABam.Rd
man/genomePlot.Rd
man/retrieveMirTargets.Rd
man/inspecting.splice.index.Rd
man/sample.size.evaluation1.Rd
man/makeGeneScaffold.Rd
man/Reads2logos.Rd
man/ncScaffold.Rd
man/runningJetta.Rd
man/reformatGdl.Rd
man/retrievePSRseq.Rd
man/tophat.Rd
man/buildingLocalAnnotation.Rd
man/normBoxplot.Rd
R/zzz.R
R/modellingstatmenu.R
R/standalonefunctions.R
R/classificationmenu.R
R/oneChannelGUI.start.R
R/dataminingmenu.R
R/initialize.extAffylmGUI.R
R/tuxedo.R
R/exonmenu.R
R/RNAseq.R
R/reformatmenu.R
R/targetmenu.R
R/helpmenu.R
R/dexseq.R
R/generaltoolsmenu.R
R/normalizemenu.R
R/qcmenu.R
R/chimeraGUI.R
R/filemenu.R
R/permutationstatmenu.R
R/oneChannelGUI.R
R/filteringmenu.R
vignettes/ngs12.png
vignettes/fignew50.png
vignettes/fignew81.png
vignettes/fignew57.png
vignettes/fignew86.png
vignettes/ngs15.png
vignettes/fignew59.png
vignettes/fignew25.png
vignettes/fignew22.png
vignettes/ngs5.png
vignettes/fignew17.png
vignettes/install.Rnw
vignettes/ngs2.png
vignettes/fignew10.png
vignettes/fignew62.png
vignettes/fignew19.png
vignettes/fignew65.png
vignettes/fignew74.png
vignettes/fignew7.png
vignettes/fignew73.png
vignettes/fignew9.png
vignettes/gene-level.analysis.Rnw
vignettes/fignew33.png
vignettes/fignew48.png
vignettes/fig9.png
vignettes/fignew34.png
vignettes/fignew46.png
vignettes/fig7.png
vignettes/fignew41.png
vignettes/fignew18.png
vignettes/fignew64.png
vignettes/fignew63.png
vignettes/ngs3.png
vignettes/fignew11.png
vignettes/ngs4.png
vignettes/fignew16.png
vignettes/fignew23.png
vignettes/fignew58.png
vignettes/fignew24.png
vignettes/fignew56.png
vignettes/ngs14.png
vignettes/ngs13.png
vignettes/fignew51.png
vignettes/fignew80.png
vignettes/fig1.png
vignettes/fignew40.png
vignettes/fignew47.png
vignettes/fig6.png
vignettes/fignew49.png
vignettes/fig8.png
vignettes/fignew35.png
vignettes/fignew32.png
vignettes/fignew8.png
vignettes/fignew6.png
vignettes/fignew72.png
vignettes/fignew1.png
vignettes/fignew75.png
vignettes/fignew44.png
vignettes/fig5.png
vignettes/fignew38.png
vignettes/fig2.png
vignettes/fignew43.png
vignettes/fignew31.png
vignettes/fignew36.png
vignettes/fignew78.png
vignettes/fignew76.png
vignettes/fignew2.png
vignettes/fignew71.png
vignettes/fignew5.png
vignettes/fignew60.png
vignettes/inst1.png
vignettes/ngs9.png
vignettes/fignew67.png
vignettes/ngs7.png
vignettes/fignew15.png
vignettes/fignew69.png
vignettes/ngs0.png
vignettes/fignew12.png
vignettes/fignew27.png
vignettes/fignew20.png
vignettes/ngs10.png
vignettes/fignew52.png
vignettes/fignew83.png
vignettes/fignew55.png
vignettes/fignew84.png
vignettes/fignew29.png
vignettes/fignew70.png
vignettes/fignew4.png
vignettes/RNAseq.Rnw
vignettes/fignew77.png
vignettes/fignew3.png
vignettes/fignew79.png
vignettes/standAloneFunctions.Rnw
vignettes/fignew42.pdf
vignettes/fignew37.png
vignettes/fignew30.png
vignettes/fig3.png
vignettes/fignew45.png
vignettes/fig4.png
vignettes/fignew39.png
vignettes/fignew54.png
vignettes/fignew85.png
vignettes/ngs16.png
vignettes/fignew28.png
vignettes/ngs11.png
vignettes/Exon-level.analysis.Rnw
vignettes/fignew53.png
vignettes/fignew82.png
vignettes/fignew21.png
vignettes/fignew26.png
vignettes/ngs1.png
vignettes/fignew13.png
vignettes/ngs6.png
vignettes/fignew14.png
vignettes/fignew68.png
vignettes/ngs8.png
vignettes/fignew66.png
vignettes/fignew61.png
data/geoVSbioc.rda
data/mmfa.rda
data/hsfa.rda
data/bofa.rda
data/chrLength.rda
data/ncHs.data.rda
data/ncRn.data.rda
data/ncMm.data.rda
data/rnfa.rda
build/vignette.rds
inst/CITATION
inst/etc/affylmGUI-menus.illumina.txt
inst/etc/localData.txt
inst/etc/netaffxUpdates.txt
inst/etc/affylmGUI-menus.large.datasets.txt
inst/etc/affylmGUI-menus.exon.txt
inst/etc/affylmGUI-menus.affy.txt
inst/etc/affylmGUI-menus.ngs.datasets.txt
inst/etc/affylmGUI-menus.gene.txt
inst/doc/gene-level.analysis.pdf
inst/doc/gene-level.analysis.Rnw
inst/doc/install.R
inst/doc/RNAseq.Rnw
inst/doc/Exon-level.analysis.pdf
inst/doc/install.pdf
inst/doc/standAloneFunctions.Rnw
inst/doc/standAloneFunctions.pdf
inst/doc/RNAseq.pdf
inst/doc/Exon-level.analysis.Rnw
inst/doc/install.Rnw
inst/batch/batch_dexseq_exon.R
inst/perl_scripts/shrimp2bed.mm.pl
inst/perl_scripts/MicroRazerSENSEMBL2genominator.hs.pl
inst/perl_scripts/Adapter_trimCRA.pl
inst/perl_scripts/README.txt
inst/perl_scripts/shrimpENSEMBL2genominator.mm.pl
inst/perl_scripts/mmu_precursor.fa
inst/perl_scripts/shrimpENSEMBL2genominator.hs.pl
inst/perl_scripts/bta_precursor.fa
inst/perl_scripts/shrimpENSEMBL2genominator.nc.pl
inst/perl_scripts/shrimpENSEMBL2genominator.mirbase.pl
inst/perl_scripts/hsa_precursor.fa
inst/perl_scripts/rno_precursor.fa
inst/perl_scripts/fastq_to_fasta.pl
