noobsb: Background subtraction with bleeding-through subtraction
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
View source: R/background_correction.R
Description
The function takes a SigSet and returns a modified SigSet
with background subtracted. Signal bleed-through was modelled using a
linear model with error estimated from cross-channel regression.
Norm-Exp deconvolution using Out-Of-Band (oob) probes.
Usage
1
Arguments
sset
a SigSet
offset
offset
detailed
if TRUE, return a list of SigSet
and regression function
Value
a modified SigSet with background correction
Examples
1
2
sset <- makeExampleSeSAMeDataSet('HM450')
sset.nb <- noobsb(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Value Examples
View source: R/background_correction.R
Description
The function takes a SigSet and returns a modified SigSet
with background subtracted. Signal bleed-through was modelled using a
linear model with error estimated from cross-channel regression.
Norm-Exp deconvolution using Out-Of-Band (oob) probes.
Usage
1 |
Arguments
sset |
a |
offset |
offset |
detailed |
if TRUE, return a list of |
Value
a modified SigSet with background correction
Examples
1 2 | sset <- makeExampleSeSAMeDataSet('HM450')
sset.nb <- noobsb(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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