qualityMask: Mask beta values by design quality
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
Description
Currently quality masking only supports three platforms
Usage
1
qualityMask(sset, mask.use.tcga = FALSE)
Arguments
sset
a SigSet object
mask.use.tcga
whether to use TCGA masking, only applies to HM450
Value
a filtered SigSet
Examples
1
2
sset <- sesameDataGet('EPIC.1.LNCaP')$sset
sset.masked <- qualityMask(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Value Examples
Description
Currently quality masking only supports three platforms
Usage
1 | qualityMask(sset, mask.use.tcga = FALSE)
|
Arguments
sset |
a |
mask.use.tcga |
whether to use TCGA masking, only applies to HM450 |
Value
a filtered SigSet
Examples
1 2 | sset <- sesameDataGet('EPIC.1.LNCaP')$sset
sset.masked <- qualityMask(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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