API for OlinkAnalyze
Facilitate Analysis of Proteomic Data from Olink
| Global functions | |
|---|---|
| %>% | Man page |
| assignSubject2Plate | Source code |
| check_data_completeness | Man page Source code |
| data_prep | Source code |
| generatePlateHolder | Source code |
| gsea_pathwayenrichment | Source code |
| int_norm_count | Source code |
| manifest | Man page |
| mapping_file_id | Man page Source code |
| norm_internal_adjust | Man page Source code |
| norm_internal_adjust_not_ref | Man page Source code |
| norm_internal_adjust_ref | Man page Source code |
| norm_internal_assay_median | Man page Source code |
| norm_internal_bridge | Man page Source code |
| norm_internal_cross_product | Man page Source code |
| norm_internal_reference_median | Man page Source code |
| norm_internal_rename_cols | Man page Source code |
| norm_internal_subset | Man page Source code |
| norm_internal_update_maxlod | Man page Source code |
| npxCheck | Source code |
| npxProcessing_forDimRed | Source code |
| npx_data1 | Man page |
| npx_data2 | Man page |
| olink_anova | Man page Source code |
| olink_anova_posthoc | Man page Source code |
| olink_boxplot | Man page Source code |
| olink_bridgeability_plot | Man page Source code |
| olink_bridgeselector | Man page Source code |
| olink_calculate_pca | Source code |
| olink_color_discrete | Man page Source code |
| olink_color_gradient | Man page Source code |
| olink_displayPlateDistributions | Man page Source code |
| olink_displayPlateLayout | Man page Source code |
| olink_dist_plot | Man page Source code |
| olink_fill_discrete | Man page Source code |
| olink_fill_gradient | Man page Source code |
| olink_fixed_lod | Source code |
| olink_heatmap_plot | Man page Source code |
| olink_iqr | Man page Source code |
| olink_lmer | Man page Source code |
| olink_lmer_plot | Man page |
| olink_lmer_posthoc | Man page |
| olink_lod | Man page Source code |
| olink_lod_internal | Source code |
| olink_median | Man page Source code |
| olink_median_iqr_outlier | Man page Source code |
| olink_nc_lod | Source code |
| olink_norm_input_assay_overlap | Man page Source code |
| olink_norm_input_check | Man page Source code |
| olink_norm_input_check_df_cols | Man page Source code |
| olink_norm_input_check_samples | Man page Source code |
| olink_norm_input_class | Man page Source code |
| olink_norm_input_clean_assays | Man page Source code |
| olink_norm_input_cross_product | Man page Source code |
| olink_norm_input_norm_method | Man page Source code |
| olink_norm_input_ref_medians | Man page Source code |
| olink_norm_input_validate | Man page Source code |
| olink_norm_product_id | Man page Source code |
| olink_norm_reference_id | Man page Source code |
| olink_normalization | Man page Source code |
| olink_normalization_bridge | Man page Source code |
| olink_normalization_bridgeable | Man page Source code |
| olink_normalization_n | Man page Source code |
| olink_normalization_n_check | Man page Source code |
| olink_normalization_product_format | Man page Source code |
| olink_normalization_project_name_check | Man page Source code |
| olink_normalization_qs | Man page Source code |
| olink_normalization_sample_check | Man page Source code |
| olink_normalization_subset | Man page Source code |
| olink_one_non_parametric | Man page Source code |
| olink_one_non_parametric_posthoc | Man page |
| olink_ordinalRegression | Man page Source code |
| olink_ordinalRegression_posthoc | Man page Source code |
| olink_pal | Man page Source code |
| olink_pathway_enrichment | Man page Source code |
| olink_pathway_heatmap | Man page Source code |
| olink_pathway_visualization | Man page Source code |
| olink_pca_plot | Man page |
| olink_pca_plot.internal | Source code |
| olink_plate_randomizer | Man page Source code |
| olink_qc_plot | Man page Source code |
| olink_ttest | Man page Source code |
| olink_umap_plot | Man page |
| olink_volcano_plot | Man page |
| olink_wilcox | Man page Source code |
| ora_pathwayenrichment | Source code |
| pc_norm_count | Source code |
| print_and_capture | Man page Source code |
| product_to_platesize | Source code |
| read_NPX | Man page Source code |
| read_NPX_explore | Source code |
| read_NPX_target | Source code |
| read_flex | Man page Source code |
| read_npx_csv | Man page Source code |
| read_npx_parquet | Man page |
| read_npx_zip | Man page Source code |
| results_to_genelist | Source code |
| select_db | Source code |
| set_plot_theme | Man page Source code |
| set_plot_theme_pheatmap | Source code |
| test_prep | Source code |
