API for demulticoder
Simultaneous Analysis of Multiplexed Metabarcodes
| Global functions | |
|---|---|
| assignTax_as_char | Man page Source code |
| assign_tax | Man page Source code |
| assign_taxonomyDada2 | Man page Source code |
| convert_asv_matrix_to_objs | Man page Source code |
| countOverlap | Man page Source code |
| createASVSequenceTable | Man page Source code |
| cut_trim | Man page Source code |
| filter_and_trim | Man page Source code |
| format_abund_matrix | Man page Source code |
| format_database | Man page Source code |
| format_db_16S | Man page Source code |
| format_db_its | Man page Source code |
| format_db_other1 | Man page Source code |
| format_db_other2 | Man page Source code |
| format_db_rps10 | Man page Source code |
| get_fastq_paths | Man page Source code |
| get_post_trim_hits | Man page Source code |
| get_pre_primer_hits | Man page Source code |
| get_read_counts | Man page Source code |
| infer_asv_command | Man page Source code |
| infer_asvs | Man page Source code |
| make_abund_matrix | Man page Source code |
| make_asv_abund_matrix | Man page Source code |
| make_cutadapt_tibble | Man page Source code |
| make_seqhist | Man page Source code |
| merge_reads_command | Man page Source code |
| orient_primers | Man page Source code |
| plot_post_trim_qc | Man page Source code |
| plot_qc | Man page Source code |
| prep_abund_matrix | Man page Source code |
| prepare_metadata_table | Man page Source code |
| prepare_reads | Man page Source code |
| primer_check | Man page Source code |
| process_single_barcode | Man page Source code |
| read_fastq | Man page Source code |
| read_parameters_table | Man page Source code |
| read_prefilt_fastq | Man page Source code |
| remove_ns | Man page Source code |
| run_cutadapt | Man page Source code |
| setup_directories | Man page Source code |
