get_pre_primer_hits: Get primer counts for reach sample before primer removal and...
In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes
View source: R/prepare_reads_count_primers.R
get_pre_primer_hits R Documentation
Get primer counts for reach sample before primer removal and trimming steps
Description
Get primer counts for reach sample before primer removal and trimming steps
Usage
get_pre_primer_hits(primer_data, fastq_data, output_directory_path)
Arguments
primer_data
Primer data.frame created using the orient_primers function to parse information on forward and reverse primer sequences.
fastq_data
A data.frame containing the read file paths and the direction of the reads by sample
output_directory_path
The path to the directory where resulting files
are output
Value
The number of reads in which the primer is found
The number of reads in which the primer is found
demulticoder documentation built on June 8, 2025, 12:47 p.m.
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View source: R/prepare_reads_count_primers.R
| get_pre_primer_hits | R Documentation |
Get primer counts for reach sample before primer removal and trimming steps
Description
Get primer counts for reach sample before primer removal and trimming steps
Usage
get_pre_primer_hits(primer_data, fastq_data, output_directory_path)
Arguments
primer_data |
Primer |
fastq_data |
A |
output_directory_path |
The path to the directory where resulting files are output |
Value
The number of reads in which the primer is found
The number of reads in which the primer is found
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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