countOverlap: Count overlap to see how well the reads were merged

In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes

Count overlap to see how well the reads were merged

Description

Count overlap to see how well the reads were merged

Usage

countOverlap(data_tables, merged_reads, barcode, output_directory_path)

Arguments

data_tables	The data tables containing the paths to read files, metadata, and metabarcode information with associated primer sequences
merged_reads	Intermediate merged read RData file
barcode	The metabarcode used throughout the workflow (applicable options: 'rps10', 'its', 'r16S', 'other1', other2')
output_directory_path	The path to the directory where resulting files are output

Value

A plot describing how well reads merged and information on overlap between reads

demulticoder documentation built on June 8, 2025, 12:47 p.m.