filter_and_trim: Wrapper function for 'filterAndTrim' function from 'DADA2',...
In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes
View source: R/cut_primers_trim_reads.R
filter_and_trim R Documentation
Wrapper function for filterAndTrim function from 'DADA2', to be used after
primer trimming
Description
Wrapper function for filterAndTrim function from 'DADA2', to be used after
primer trimming
Usage
filter_and_trim(
output_directory_path,
temp_directory_path,
cutadapt_data_barcode,
barcode_params,
barcode
)
Arguments
output_directory_path
The path to the directory where resulting files
are output
cutadapt_data_barcode
Metabarcode-specific FASTQ read files trimmed of primers
Value
Filtered and trimmed reads
demulticoder documentation built on June 8, 2025, 12:47 p.m.
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View source: R/cut_primers_trim_reads.R
| filter_and_trim | R Documentation |
Wrapper function for filterAndTrim function from 'DADA2', to be used after
primer trimming
Description
Wrapper function for filterAndTrim function from 'DADA2', to be used after
primer trimming
Usage
filter_and_trim(
output_directory_path,
temp_directory_path,
cutadapt_data_barcode,
barcode_params,
barcode
)
Arguments
output_directory_path |
The path to the directory where resulting files are output |
cutadapt_data_barcode |
Metabarcode-specific FASTQ read files trimmed of primers |
Value
Filtered and trimmed reads
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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