get_post_trim_hits: Get primer counts for reach sample after primer removal and...
In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes
View source: R/cut_primers_trim_reads.R
get_post_trim_hits R Documentation
Get primer counts for reach sample after primer removal and trimming steps
Description
Get primer counts for reach sample after primer removal and trimming steps
Usage
get_post_trim_hits(primer_data, cutadapt_data, output_directory_path)
Arguments
primer_data
Primer data.frame created using the orient_primers function to parse information on forward and reverse primer sequences.
cutadapt_data
FASTQ read files trimmed of primers
output_directory_path
The path to the directory where resulting files
are output
Value
Table of read counts across each sample
demulticoder documentation built on June 8, 2025, 12:47 p.m.
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View source: R/cut_primers_trim_reads.R
| get_post_trim_hits | R Documentation |
Get primer counts for reach sample after primer removal and trimming steps
Description
Get primer counts for reach sample after primer removal and trimming steps
Usage
get_post_trim_hits(primer_data, cutadapt_data, output_directory_path)
Arguments
primer_data |
Primer |
cutadapt_data |
FASTQ read files trimmed of primers |
output_directory_path |
The path to the directory where resulting files are output |
Value
Table of read counts across each sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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