get_read_counts: Final inventory of read counts after each step from input to...
In demulticoder: Simultaneous Analysis of Multiplexed Metabarcodes
View source: R/assign_taxonomy.R
get_read_counts R Documentation
Final inventory of read counts after each step from input to removal of chimeras. This function deals with if you have more than one sample. TODO optimize for one sample
Description
Final inventory of read counts after each step from input to removal of chimeras. This function deals with if you have more than one sample. TODO optimize for one sample
Usage
get_read_counts(
asv_abund_matrix,
temp_directory_path,
output_directory_path,
metabarcode
)
Arguments
asv_abund_matrix
The final abundance matrix containing amplified sequence variants
demulticoder documentation built on June 8, 2025, 12:47 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/assign_taxonomy.R
| get_read_counts | R Documentation |
Final inventory of read counts after each step from input to removal of chimeras. This function deals with if you have more than one sample. TODO optimize for one sample
Description
Final inventory of read counts after each step from input to removal of chimeras. This function deals with if you have more than one sample. TODO optimize for one sample
Usage
get_read_counts(
asv_abund_matrix,
temp_directory_path,
output_directory_path,
metabarcode
)
Arguments
asv_abund_matrix |
The final abundance matrix containing amplified sequence variants |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.